VP_proj_creator: Initiate a R6 object project

In Thibaudpmx/QSPVP: Parameter Space Mapping algorithms to accelerate the creation of plausible Virtual Patients

Initiate a R6 object project

Description

Initiate a R6 object project

Initiate a R6 object project

Methods

Public methods

• VP_proj_creator$new()

• VP_proj_creator$print()

• VP_proj_creator$add_VP()

• VP_proj_creator$algo2()

• VP_proj_creator$big_screening()

• VP_proj_creator$compute_zone_maybe()

• VP_proj_creator$compute_zone_sure()

• VP_proj_creator$fill_simul()

• VP_proj_creator$launch_programmed()

• VP_proj_creator$make_filters()

• VP_proj_creator$n_filter_reduc()

• VP_proj_creator$plot_VP()

• VP_proj_creator$plot_2D()

• VP_proj_creator$plot_3D()

• VP_proj_creator$set_targets()

• VP_proj_creator$time_analyserr()

• VP_proj_creator$clone()

---

Method new()

Usage

VP_proj_creator$new(
  sourcefile = file.path(find.package("QSPVP"), "config_Simeoni.r")
)

---

Method print()

Usage

VP_proj_creator$print(...)

---

Method add_VP()

Usage

VP_proj_creator$add_VP(
  VP_df,
  fix_df = NULL,
  saven = 50,
  time_compteur = F,
  fillatend = F,
  reducefilteratend = F,
  npersalve = 1000,
  use_green_filter = F,
  pctActivGreen = 0.1,
  keepRedFiltaftDis = T,
  methodFilter = 2,
  use_red_filter = T,
  cmtalwaysbelow = NULL,
  keep = NULL,
  saveVPRej = T,
  timeSave = NULL,
  PreviousResults = tibble(),
  RedFilterDisAllProt = F,
  GreenFilterDisAllProt = F
)

---

Method algo2()

Usage

VP_proj_creator$algo2(
  domain,
  fix = NULL,
  npersalve = 2e+05,
  npersalveFinal = 1e+06,
  file = "",
  includeBorderZoom = F,
  save_every = 5,
  method = 1,
  RedFilterDisAllProt = F,
  GreenFilterDisAllProt = F,
  keepFilterNeg = F
)

---

Method big_screening()

Usage

VP_proj_creator$big_screening(domain)

---

Method compute_zone_maybe()

Usage

VP_proj_creator$compute_zone_maybe(
  zone_sure = F,
  keptSingleValue = T,
  limits = NULL
)

---

Method compute_zone_sure()

Usage

VP_proj_creator$compute_zone_sure(domain, keptSingleValue = T)

---

Method fill_simul()

Usage

VP_proj_creator$fill_simul(nsalve = 500)

---

Method launch_programmed()

Usage

VP_proj_creator$launch_programmed()

---

Method make_filters()

Usage

VP_proj_creator$make_filters(cmt = "tumVol")

---

Method n_filter_reduc()

Usage

VP_proj_creator$n_filter_reduc()

---

Method plot_VP()

Usage

VP_proj_creator$plot_VP(nmax = Inf, rowids = NULL)

---

Method plot_2D()

Usage

VP_proj_creator$plot_2D(
  x,
  y,
  cmt_green = "tumVol",
  toaddneg = NULL,
  plotMain = F,
  add_point = F,
  IDref = NULL,
  plotoreturn = 3
)

---

Method plot_3D()

Usage

VP_proj_creator$plot_3D(x, y, z, toaddneg = NULL, add_point = F)

---

Method set_targets()

Usage

VP_proj_creator$set_targets(
  ...,
  filter = NULL,
  ntime = 3,
  manual = NULL,
  timeforce = NULL
)

---

Method time_analyserr()

Usage

VP_proj_creator$time_analyserr()

---

Method clone()

The objects of this class are cloneable with this method.

Usage

VP_proj_creator$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Author(s)

Thibaud Derippe

Thibaudpmx/QSPVP documentation built on Nov. 14, 2022, 7:07 p.m.