NEWS.md

In ThinkR-open/attachment: Deal with Dependencies

dev version

• fix create_renv_for_dev by removing 'renv' from folder_to_include.

attachment 0.4.5

Bug fixes

• att_from_examples() Removed escape characters (\) from Roxygen examples.

attachment 0.4.4

Patch

• att_from_examples() Fixed the selection of .R files in the source directory. (#124)

attachment 0.4.3

New features

• Add att_from_examples() to get all packages called in examples from R files
• Add att_from_data() to look for functions called in data loading code
• att_amend_desc amend package DESCRIPTION file (Suggests) with the list of dependencies extracted from examples in R files.
• set_remotes_to_desc() takes into account the branch

Patch

• Adding an example using suggest packages to the dummypackage
• att_from_rmds() and att_from_rscript doesn't search in 'renv' folder anymore

attachment 0.4.2

New features

• create_renv_for_dev can work even outside of an R packages

attachment 0.4.1

Bug fixes

• Modification of unit tests following {roxygen2} changes. att_amend_desc and att_from_namespace return messages instead of warnings. (@MurielleDelmotte)

attachment 0.4.0

Breaking changes

• When using att_amend_desc() without the default parameters, like pkg_ignore = "x" will now require att_amend_desc(pkg_ignore = "x", update.config = TRUE), otherwise, it will fail. This allows for the use of parameters stored in the config file when running att_amend_desc() directly in the console. Recommendation: Run att_amend_desc(pkg_ignore = "x", update.config = TRUE) if you have to update your config, run att_amend_desc() daily as you'll want to use what is stored in the config file.

• create_dependencies_file() gets parameter install_only_if_missing = FALSE by default to complete the installation instructions packages only if missing. (@MurielleDelmotte)

New features

• att_amend_desc() can run with the last set of parameters stored in a configuration file, without having to call them all each time. See vignettes and documentation of parameters update.config = FALSE, use.config = FALSE and path.c = "dev/config_attachment.yaml". (@dagousket)
• create_dependencies_file() now takes other sources into account (git, gitlab, github, bioc, local). (@MurielleDelmotte)
• Use create_dependencies_file(to = NULL) to only get the output as character and do not create a file

Bug fixes

• att_amend_desc() does not modify user options("warn") level anymore (#94)
• att_amend_desc() allows "Remotes" field to contain @ref (#67)

attachment 0.3.1

New features

• find_remotes() now informs when using "r-universe" repositories.

Minor changes

• a new parameters check_if_suggests_is_installed in att_amend_desc() allow not to check if suggested package is installed. (thanks to @yogat3ch)
• create_renv_for_prod() don't look anymore for suggested packages
• Clean a maximum of temp directories after examples and unit tests

attachment 0.3.0

New features

• find_remotes() and set_remotes_to_desc() now detects github, gitlab, git, bitbucket, local installations to add to the "Remotes:" part of the DESCRIPTION file (@MurielleDelmotte)
• Quarto documents can be parsed with att_from_qmds() as an alias of att_from_rmds().

Minor changes

• Documentation for bookdown and quarto dependencies extraction updated

Bug fixes

• Allow to use dependencies after att_amend_desc() #52
• Fix HTML5 issues with update to {roxygen2}

attachment 0.2.5

Major changes

• add create_renv_for_dev() and create_renv_for_prod() function to create renv.lock file based on development project (@VincentGuyader and @statnmap).
• Quarto documents can be parsed with att_from_rmds().
• Documentation for bookdown and quarto dependencies extraction updated

Minor changes

• att_amend_desc() now saves file before processing
• Newline escape code \n will not interfere with package discovery

attachment 0.2.4

Breaking changes

• (broken in 0.2.3) - att_to_desc_from_is() can now run with must.exist = FALSE to be used to fill DESCRIPTION file during bookdown CI process. CI YAML files must be updated with this parameter.

Major changes

• Split vignette in two: package development and other dependencies management

Minor changes

• Allow to clean remotes list before updating with set_remotes_to_desc(clean = TRUE)

attachment 0.2.3

Major changes

• Allow to add Remotes field to DESCRIPTION with set_remotes_to_desc()

Minor changes

• Check for packages names misspelled before filling DESCRIPTION.
• Allow vector of R files in att_from_rscripts()
• Move default git branch from master to main

Bug fixes

• Add NAMESPACE if missing with att_amend_desc(document = TRUE)
• Add DESCRIPTION with empty skeleton if missing with att_amend_desc()
• Default to remove NAMESPACE before updating to get rid of corrupted ones in att_from_namespace()
• Fix detection of multiple render outputs in Rmd YAML with att_from_rmd()

attachment 0.2.1

• Check for older pandoc version in tests

attachment 0.2.0

Breaking changes att_to_description() deprecated in favor of att_amend_desc() to be first in autocompletion list, as this is the most used function of this package. att_from_rmd() gets parameter inline = TRUE by default to explore calls for packages in inline R code. * att_from_rmd() and att_from_rmds() are not anymore executed in separate R session by default. You must set inside_rmd = TRUE to do so.

Minor Add find_remotes() to help fill Remotes field in DESCRIPTION att_to_desc_from_is() add parameter normalize to avoid problem with {desc}. (See https://github.com/r-lib/desc/issues/80)

attachment 0.1.0

• att_amend_desc() is an alias for att_to_description()
• att_desc_from_is() amends DESCRIPTION file from imports/suggests vector of packages
• att_to_desc_from_pkg() is an alias for att_to_description()
• Removed dependency to {devtools}, replace by {roxygen}
• att_to_description() shows packages added/removed from DESCRIPTION
• att_to_description() deals with dependencies in tests/ directory
• att_from_rmds() allows user defined regex to detect Rmd files

attachment 0.0.9

• att_from_rmd adds a temporary encoding parameter as knitr::purl will only deal with UTF-8 in the future. Parameter not added in att_from_rmds.
• att_to_description if {covr} is needed, should be added in parameter extra.suggests
• att_to_description has a parameter 'dir.t' to extract suggests dependencies from test directory Available by default

attachment 0.0.8

• att_to_description allows for 'LinkingTo' field in DESCRIPTION with a message
• att_from_rmd now reads yaml header
• att_from_rmd use purl to extract R code in an other R session using system("Rscript -e ''")
• att_from_rmd: add warn option to allow hide messages from purl()

attachment 0.0.7

• att_to_description accept parameter path for package not being the current project
• att_to_description no error if NAMESPACE is empty
• create_dependencies_file filters base packages that cannot be installed

attachment 0.0.6

• Prepare examples for CRAN

attachment 0.0.5

• att_to_description deals with Remote dependencies
• att_to_description deals with Depends dependencies
• att_to_description keeps versions of packages previously added
• att_to_description removes option for automatic pkg version
• create_dependencies_file deals with github Remotes
• att_from_rmds now accept a vector of Rmd filenames

attachment 0.0.4

• Add examples in functions

attachment 0.0.3

• att_to_description(add_version = TRUE) adds version of package in DESCRIPTION
• att_to_description(pkg_ignore) adds possibility to ignore some packages

attachment 0.0.3

• Get ready for CRAN
• Add tests.

attachment 0.0.2

• New function install_from_description to install all missing packages listed in the description file
• Add an hex by @statnmap !
• Allow for absence of vignette folder in att_to_description
• Add create_dependencies_file to create a file listing all packages dependencies to dinstall before your package
• Allow for pkg::fun calls in R scripts with att_from_functions
• Add option to run devtools::document() before att_from_description

attachment 0.0.0.9000

• Added a NEWS.md file to track changes to the package.

ThinkR-open/attachment documentation built on June 15, 2025, 1:24 a.m.