ThomasChln/snpclust: SNP Feature Summarization for Unsupervised Clustering

SNP selection based on PCA contributions and summarization of nearby correlated SNPs by estimating haplotypes using the SHAPEIT software, in order to perform genome wide unsupervised clustering and enhance non-ancestry signals. Developed to study systemic autoimmune diseases in the IMI PRECISESADS project.

Getting started

Package details

Maintainer
LicenseGPL-3 | file LICENSE
Version0.3
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ThomasChln/snpclust")
ThomasChln/snpclust documentation built on June 11, 2020, 4:27 p.m.