Files in TileDB-Inc/tiledbsc
TileDB Single Cell SOMA API
.Rbuildignore
.devcontainer/Dockerfile
.devcontainer/Rprofile.site
.devcontainer/devcontainer.json
.github/.gitignore
.github/CONTRIBUTING.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
.lintr
DESCRIPTION
LICENSE
LICENSE.md
Makefile
NAMESPACE
NEWS.md
R/AnnotationArray.R
R/AnnotationDataframe.R
R/AnnotationGroup.R
R/AnnotationMatrix.R
R/AnnotationMatrixGroup.R
R/AnnotationPairwiseMatrix.R
R/AnnotationPairwiseMatrixGroup.R
R/AssayMatrix.R
R/AssayMatrixGroup.R
R/CommandsArray.R
R/SOMA.R
R/SOMACollection.R
R/TileDBArray.R
R/TileDBGroup.R
R/TileDBObject.R
R/TileDBURI.R
R/datasets.R
R/tiledbsc-package.R
R/utils-coo.R
R/utils-dgtmatrix.R
R/utils-seurat.R
R/utils-tiledb.R
R/utils.R
README.md
data-raw/versioned-testing-dataset.R
inst/bench/run-benchmarks.R
inst/extdata/barcodes.tsv
inst/extdata/cr3.0/barcodes.tsv.gz
inst/extdata/cr3.0/features.tsv.gz
inst/extdata/cr3.0/matrix.mtx.gz
inst/extdata/genes.tsv
inst/extdata/matrix.mtx
inst/extdata/nbt_small.Rdata
inst/extdata/visium/filtered_feature_bc_matrix.h5
inst/extdata/visium/spatial/scalefactors_json.json
inst/extdata/visium/spatial/tissue_lowres_image.png
inst/extdata/visium/spatial/tissue_positions_list.csv
man/AnnotationArray.Rd
man/AnnotationDataframe.Rd
man/AnnotationGroup.Rd
man/AnnotationMatrix.Rd
man/AnnotationMatrixGroup.Rd
man/AnnotationPairwiseMatrix.Rd
man/AnnotationPairwiseMatrixGroup.Rd
man/AssayMatrix.Rd
man/AssayMatrixGroup.Rd
man/CommandsArray.Rd
man/SCDataset.Rd
man/SCGroup.Rd
man/SOMA.Rd
man/SOMACollection.Rd
man/TileDBArray.Rd
man/TileDBGroup.Rd
man/TileDBObject.Rd
man/dataset_seurat_pbmc3k.Rd
man/tiledbsc-package.Rd
tests/testthat.R
tests/testthat/helper-arrays.R
tests/testthat/helper-test-data.R
tests/testthat/helpers.R
tests/testthat/test-AssayMatrixGroup.R
tests/testthat/test-SOMA-filtering.R
tests/testthat/test-SOMACollection-filtering.R
tests/testthat/test-TileDBURI.R
tests/testthat/test-compatibility.R
tests/testthat/test-data/scdataset-pbmc-small_0-1-2.zip
tests/testthat/test-legacy-mode.R
tests/testthat/test_AnnotationDataFrame.R
tests/testthat/test_AnnotationGroup.R
tests/testthat/test_AnnotationMatrix.R
tests/testthat/test_AnnotationPairwiseMatrix.R
tests/testthat/test_AnnotationPairwiseMatrix_Seurat_Graph.R
tests/testthat/test_AssayMatrix.R
tests/testthat/test_SCDataset_Seurat_Deprecated.R
tests/testthat/test_SCGroup_Seurat_Deprecated.R
tests/testthat/test_SOMACollection_Seurat.R
tests/testthat/test_SOMA_Seurat.R
tests/testthat/test_SOMA_SummarizedExperiment.R
tests/testthat/test_TileDBArray.R
tests/testthat/test_TileDBGroup.R
tests/testthat/test_utils.R
tests/testthat/test_utils_matrix_conversion.R
tiledbsc.Rproj
vignettes/.gitignore
vignettes/filtering.Rmd
vignettes/introduction.Rmd
vignettes/quickstart-pc-pairs-1.png
vignettes/quickstart.Rmd
vignettes/quickstart.Rmd.source
vignettes/updates.Rmd
