AnnotationMatrixGroup: Single-cell Annotation Matrix Group

In TileDB-Inc/tiledbsc: TileDB Single Cell SOMA API

Single-cell Annotation Matrix Group

Description

Class for representing a TileDB group containing one or more AnnotationMatrix arrays that share a common dimension name.

Super classes

tiledbsc::TileDBObject -> tiledbsc::TileDBGroup -> tiledbsc::AnnotationGroup -> AnnotationMatrixGroup

Methods

Public methods

• AnnotationMatrixGroup$add_annotation_matrix()

• AnnotationMatrixGroup$clone()

Inherited methods

• tiledbsc::TileDBObject$class()
• tiledbsc::TileDBObject$exists()
• tiledbsc::TileDBGroup$add_member()
• tiledbsc::TileDBGroup$add_metadata()
• tiledbsc::TileDBGroup$count_members()
• tiledbsc::TileDBGroup$get_member()
• tiledbsc::TileDBGroup$get_members()
• tiledbsc::TileDBGroup$get_metadata()
• tiledbsc::TileDBGroup$group_exists()
• tiledbsc::TileDBGroup$list_member_uris()
• tiledbsc::TileDBGroup$list_members()
• tiledbsc::TileDBGroup$list_object_uris()
• tiledbsc::TileDBGroup$list_objects()
• tiledbsc::TileDBGroup$print()
• tiledbsc::TileDBGroup$remove_member()
• tiledbsc::TileDBGroup$tiledb_group()
• tiledbsc::AnnotationGroup$initialize()
• tiledbsc::AnnotationGroup$reset_query()
• tiledbsc::AnnotationGroup$set_query()

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Method add_annotation_matrix()

Add a new AnnotationMatrix array to the group.

Usage

AnnotationMatrixGroup$add_annotation_matrix(data, name, metadata = NULL)

Arguments

data

a matrix of annotation data to ingest. The matrix rows must be aligned to the SOMA dimension indicated by the group's dimension_name.

name

Name of the new variable annotation matrix.

metadata

Named list of metadata to add.

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Method clone()

The objects of this class are cloneable with this method.

Usage

AnnotationMatrixGroup$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

TileDB-Inc/tiledbsc documentation built on Aug. 26, 2023, 2:32 p.m.