TillBirkner/metadeconfoundR: Check Multiple Covariates for Potenial Confounding Effects

Using non-parametric tests, naive associations between omics features and metadata in cross-sectional data-sets are detected. In a second step, confounding effects between metadata associated to the same omics feature are detected and labeled using nested post-hoc model comparison tests. The generated output can be graphically summarized using the built-in plotting function.

Getting started

Package details

AuthorSofia Forslund, Till Birkner
Bioconductor views Metabolomics Metagenomics Microbiome MultipleComparison Software Transcriptomics
MaintainerTill Birkner <metadeconf@till-birkner.de>
LicenseGPL-2
Version0.3.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("TillBirkner/metadeconfoundR")
TillBirkner/metadeconfoundR documentation built on Sept. 3, 2023, 9:11 a.m.