genesName_ENSEMBL: Obtain the genes names in the genomic regions of interest...
In TiphaineCMartin/coMET_original: coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns.

Description Usage Arguments Details Value Author(s) References See Also Examples

Obtain the genes names in the genomic regions of interest from ENSEMBL

1	genesName_ENSEMBL(gen, chr, start, end, dataset)

`gen`	the name of the genome
`chr`	the chromosome of interest
`start`	the first position in the region of interest (the smallest value)
`end`	the last position in the region of interest (the largest value)
`dataset`	Name of the database to select genes

Can be null

List of name of genes found in this region of interest.

Tiphaine Martin

go to ENSEMBL

http://bioconductor.org/packages/release/bioc/html/Gviz.html

ISCA_UCSC, GWAScatalog_UCSC, knownGenes_UCSC, GeneReviews_UCSC, GAD_UCSC, genes_ENSEMBL, xenorefGenes_UCSC, transcript_ENSEMBL,

library("Gviz")
gen <- "hg38"
chr <- "chr7"
start <- 38290160
end <- 38303219

if(interactive()){
  dataset<- "hsapiens_gene_ensembl"
  geneNameEnsembl<- genesName_ENSEMBL(gen,chr,start,end,dataset)
  geneNameEnsembl
} else {
  data(geneNameEnsembl)
  geneNameEnsembl
}