README.md

In Tobias-Ruff/relectro_bak: Analysis of electrophysiological data

relectro

R package to analyze electrophysiological data. It is still in development and new functionalities are added regularly. The focus is on data from tetrode recording experiments. Most of the package is written in R but some sections are written in C for speed. Analysis can easily be run in parallel with the snow package.

You will need to install the fftw3 C library to compute discrete Fourier transforms with relectro. You can install it on a linux machine.

• With Fedora: dnf install -y fftw3-devel
• With Ubuntu: apt-get install libfftw3-dev

Install

• Get the source code with the git clone command: git clone http://github.com/kevin-allen/relectro.git

If you want to modify the code of relecto, I recommand using R studio together with the book "R Packages" by Hadley Wickham. Most of the tools used to develop relectro are presented in this book. You probably want to use the R package devtools for development.

• From R studio, click File/Open project... and select relectro.Rproj

If you just want to use the functions and objects of relectro, go in the terminal and run the following

• R CMD build relectro
• R CMD INSTALL relectro

You might need to add a few R packages to be able to build relectro. Here is a list of what was missing on a Fedora installation. In R, use install.packages().

• rmarkdown
• snow
• plotrix
• knitr
• abind
• testthat
• oce

Feedback

Please report any issues or suggestions at http://github.com/kevin-allen/relectro/issues.

Warning

There is no warranty that the code is bug-free. The tests run on the functions can be found in the tests directory.

Tobias-Ruff/relectro_bak documentation built on May 3, 2019, 6:43 p.m.