── R CMD check results ───────────────────────────────────── graphsim 1.0.3 ──── Duration: 1m 55.4s
0 errors ✓ | 0 warnings ✓ | 0 notes ✓
R CMD check succeeded
Reactome.org urls have been checked and direct to the correct database. These are only needed for documentation.
graphsim/tests/figs is used exclusively for testing plotting functions with "vdiffr".
Link to local file works on GitHub. Links changed to "\href"" calls
This package has also been accepted at the Journal of Open-Source Software for peer-review. This release updates citation information to the publication.
Vignettes build with knitr::rmarkdown as used for this CRAN package: https://github.com/yixuan/prettydoc/
Building vignettes that contain real biological datasets are important to demonstrate functionality of the package (requested by reviewers for JOSS).
This means checks take considerable time to build vignettes. Pre-generated HTMLs are provided and "eval=FALSE" has been added to the Rmarkdown version of examples that take a long time to run.
Vignettes are pregenerated to preserve headers, table of contents, and HTML style.
Vignettes in Rmarkdown have been marked as eval=FALSE in some cases (to avoid checks timing out on CRAN).
Pre-generated results so that code and results match will be considered in the future. This is an urgent release to ensure that checks pass on CRAN (without timing out) and the (published) package is not archived and remains accessible.
I will maintain this package at my current address
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