Files in Townsend-Lab-Yale/ces.refset.hg38
Reference data set (hg38) for cancereffectsizeR package
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/export.R
README.md
data-raw/build_maf_preload_anno_granges.R
data-raw/get_cached_chromInfo.R
data-raw/make_cosmic_v3.2_hg38_signature_set.R
data-raw/make_cosmic_v3.4_hg38_signature_set.R
data-raw/make_hg38_refset.R
inst/extdata/COSMIC_v3.2_SBS_GRCh38.txt
inst/extdata/COSMIC_v3.2_signature_metadata.txt
inst/extdata/COSMIC_v3.4_CN_GRCh37.txt
inst/extdata/COSMIC_v3.4_DBS_GRCh38.txt
inst/extdata/COSMIC_v3.4_ID_GRCh37.txt
inst/extdata/COSMIC_v3.4_RNA-SBS_GRCh37.txt
inst/extdata/COSMIC_v3.4_SBS_GRCh38.txt
inst/extdata/COSMIC_v3.4_SV_GRCh38.txt
inst/refset/RefCDS.dndscv.rds
inst/refset/RefCDS.rds
inst/refset/cached_chromInfo.rds
inst/refset/cds_dbs_exposure.rds
inst/refset/covariates/CESC.rds
inst/refset/covariates/ESCA.rds
inst/refset/covariates/GBM.rds
inst/refset/covariates/HNSC.rds
inst/refset/covariates/KIRC.rds
inst/refset/covariates/LGG.rds
inst/refset/covariates/LIHC.rds
inst/refset/covariates/OV.rds
inst/refset/covariates/PRAD.rds
inst/refset/covariates/SKCM.rds
inst/refset/covariates/THCA.rds
inst/refset/covariates/UCEC.rds
inst/refset/covariates/bladder.rds
inst/refset/covariates/breast.rds
inst/refset/covariates/colon.rds
inst/refset/covariates/lung.rds
inst/refset/covariates/lymphoma.rds
inst/refset/covariates/pancreas.rds
inst/refset/covariates/rectum.rds
inst/refset/covariates/stomach.rds
inst/refset/default_exome_gr.rds
inst/refset/gene_names.rds
inst/refset/gene_trinuc_comp.rds
inst/refset/genome_build_info.rds
inst/refset/gr_genes.dndscv.rds
inst/refset/gr_genes.rds
inst/refset/maf_preload_anno/cmc_92_gr_by_tier.rds
inst/refset/maf_preload_anno/gnomad_common_variation_granges.rds
inst/refset/maf_preload_anno/repeat_masked_hg38_granges.rds
inst/refset/signatures/COSMIC_v3.4_signatures.rds
inst/refset/signatures/previous/COSMIC_v3.2_signatures.rds
inst/refset/transcripts.rds
inst/refset/tri.counts.exome.rds
inst/refset/tri.counts.genome.rds
