toxpiR-datasets: toxpiR data objects

In ToxPi/toxpiR: Create ToxPi Prioritization Models

toxpiR data objects

Description

Objects included in the toxpiR package, loaded with utils::data

Usage

data(txp_example_input, package = "toxpiR")

data(txp_example_model, package = "toxpiR")

txp_example_input

Small example input data to be used with txpCalculateScores in creating TxpResult objects. A base::data.frame with 10 rows and 9 variables

name

Observation names

metric#

Input data for ToxPi models

txp_example_model

Example TxpModel object intended for txp_example_data; model with 4 slices.

Source

https://github.com/ToxPi/ToxPi-example-files

Examples

data(txp_example_input, package = "toxpiR")
data(txp_example_model, package = "toxpiR")
txp_example_input
txp_example_model

## Code to create txp_example_model
tf1 <- TxpTransFuncList(linear = function(x) x)
sl <- TxpSliceList(s1 = TxpSlice(sprintf("metric%d", 1:2)),
                   s2 = TxpSlice("metric3"),
                   s3 = TxpSlice(sprintf("metric%d", 4:7),
                                 tf1[rep("linear", 4)]),
                   s4 = TxpSlice("metric8", tf1))
tf2 <- TxpTransFuncList(NULL, linear = function(x) x, NULL, NULL)
TxpModel(txpSlices = sl, txpWeights = c(2, 1, 3, 2), txpTransFuncs = tf2)

ToxPi/toxpiR documentation built on Sept. 4, 2024, 5:55 p.m.