Files in TransBioInfoLab/rnaEditr
Statistical analysis of RNA editing sites and hyper-editing regions
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/AllCloseByRegions.R
R/AllCoeditedRegions.R
R/AnnotateResults.R
R/CreateEditingTable.R
R/SingleCloseByRegion.R
R/SingleCoeditedRegion.R
R/SummarizeAllRegions.R
R/SummarizeSingleRegion.R
R/TestAssociations.R
R/TestSingleRegion.R
R/TransformToGR.R
R/data_rnaedit_df.R
R/data_t_rnaedit_df.R
R/util_AddMetaData.R
R/util_CountSamplesPerGroup.R
R/util_CreateOutputDF.R
R/util_CreateRdrop.R
R/util_FindCorrelatedRegions.R
R/util_GetMinPairwiseCor.R
R/util_GetSitesLocations.R
R/util_MakeModelFormula.R
R/util_MarkCoeditedSites.R
R/util_OrderSitesByLocation.R
R/util_PlotEditingCorrelations.R
R/util_RegionSummaryMethod.R
R/util_SitesToRegion.R
README.md
_pkgdown.yml
data/rnaedit_df.rda
data/t_rnaedit_df.rda
inst/README.md
inst/extdata/hg19_annoGene_gr.RDS
inst/extdata/hg38_annoGene_gr.RDS
inst/extdata/pheno_df.RDS
inst/scripts/1-CreateAnnoGeneGR.R
inst/scripts/2-CreateRnaEditAndPhenoDFs.R
inst/scripts/3-Create_ex_data.R
man/AddMetaData.Rd
man/AllCloseByRegions.Rd
man/AllCoeditedRegions.Rd
man/AnnotateResults.Rd
man/CountSamplesPerGroup.Rd
man/CreateEditingTable.Rd
man/CreateOutputDF.Rd
man/CreateRdrop.Rd
man/FindCorrelatedRegions.Rd
man/GetMinPairwiseCor.Rd
man/GetSitesLocations.Rd
man/MakeModelFormula.Rd
man/MarkCoeditedSites.Rd
man/OrderSitesByLocation.Rd
man/PlotEditingCorrelations.Rd
man/RegionSummaryMethod.Rd
man/SingleCloseByRegion.Rd
man/SingleCoeditedRegion.Rd
man/SitesToRegion.Rd
man/SummarizeAllRegions.Rd
man/SummarizeSingleRegion.Rd
man/TestAssociations.Rd
man/TestSingleRegion.Rd
man/TransformToGR.Rd
man/rnaedit_df.Rd
man/t_rnaedit_df.Rd
tests/testthat.R
tests/testthat/test_AllCloseByRegions.R
tests/testthat/test_AllCoeditedRegions.R
tests/testthat/test_AnnotateResults.R
tests/testthat/test_CreateEditingTable.R
tests/testthat/test_SummarizeAllRegions.R
tests/testthat/test_TestAssociations.R
tests/testthat/test_TransformToGR.R
vignettes/.gitignore
vignettes/introduction_to_rnaEditr.Rmd
vignettes/region-based-analysis.png
vignettes/site-specific-analysis.png
