Man pages for TransBioInfoLab/rnaEditr
Statistical analysis of RNA editing sites and hyper-editing regions
| AddMetaData | Add metadata columns to GRanges object. |
| AllCloseByRegions | Extract clusters of RNA editing sites located closely in... |
| AllCoeditedRegions | Extracts contiguous co-edited genomic regions from input... |
| AnnotateResults | Add Annotations to site-specific or region-based analysis... |
| CountSamplesPerGroup | Find minimum sample Size per group. |
| CreateEditingTable | Convert RNA editing matrix into a special data frame with... |
| CreateOutputDF | Create output data in the format of data frame. |
| CreateRdrop | Calculates R-drop values for RNA editing sites. |
| FindCorrelatedRegions | Find contiguous co-edited subregions. |
| GetMinPairwiseCor | Calculate minimum pairwise correlation for sub-regions. |
| GetSitesLocations | Extract RNA editing sites located in a genomic region. |
| MakeModelFormula | Make model formula. |
| MarkCoeditedSites | Mark RNA editing sites in contiguous and co-edited region. |
| OrderSitesByLocation | Order RNA editing sites by their genomic locations. |
| PlotEditingCorrelations | Plotting correlations of RNA editing levels within a region. |
| RegionSummaryMethod | Methods to summarize RNA editing levels from multiple sites... |
| rnaedit_df | Example breast cancer RNA editing dataset. |
| SingleCloseByRegion | Extracts clusters of RNA editing sites located closely in a... |
| SingleCoeditedRegion | Extracts contiguous co-edited genomic regions from a single... |
| SitesToRegion | Create output data in the format of GRanges. |
| SummarizeAllRegions | Summarize RNA editing levels from multiple sites in regions. |
| SummarizeSingleRegion | Summarizes RNA editing levels from multiple sites in a single... |
| TestAssociations | Test associations between phenotype and RNA editing levels. |
| TestSingleRegion | Test associations between phenotype and RNA editing levels. |
| TransformToGR | Transform gene symbols or region ranges into GRanges object. |
| t_rnaedit_df | Transposed breast cancer example dataset. |
