Files in TsuPeiChiu/DNAshapeR
High-throughput prediction of DNA shape features
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/.Rapp.history
R/RcppExports.R
R/core.R
R/encodeSeqShape.R
R/getFasta.R
R/getShape.R
R/plotShape.R
README.md
inst/CITATION
inst/extdata/CGRsample.fa
inst/extdata/CGRsample_short.fa
inst/extdata/MethylSample.fa
inst/extdata/MethylSamplePos.fa
inst/extdata/PBMsample.fa
inst/extdata/PBMsample.s
inst/extdata/PBMsample_short.fa
inst/extdata/PBMsample_short.s
inst/extdata/SELEXsample.fa
inst/extdata/SELEXsample.s
inst/extdata/SELEXsample_short.fa
inst/extdata/SELEXsample_short.s
inst/extdata/SingleSeqsample.fa
inst/extdata/SingleSeqsample.fa.MGW
man/DNAshapeR-package.Rd
man/convertMethFile.Rd
man/encodeKMerSeq.Rd
man/encodeKmerHbond.Rd
man/encodeNstOrderShape.Rd
man/encodeSeqShape.Rd
man/getFasta.Rd
man/getShape.Rd
man/heatShape.Rd
man/normalize.Rd
man/normalizeShape.Rd
man/plotShape.Rd
man/readNonStandardFastaFile.Rd
man/readShape.Rd
man/trackShape.Rd
src/OptionParser.cpp
src/OptionParser.h
src/Output.cpp
src/Output.h
src/RcppExports.cpp
src/ReadData.cpp
src/ReadData.h
src/SNP.cpp
src/SNP.h
src/ShapePrediction.cpp
src/TableCompiler.cpp
src/TableCompiler.h
src/common.h
src/map.cpp
src/map.h
src/prediction.cpp
src/prediction.h
src/properties.cpp
src/properties.h
src/utilities.cpp
src/utilities.h
tests/testthat.R
tests/testthat/test_read.R
vignettes/DNAshapeR.Rmd
