encodeNstOrderShape: Encode n-st order shape features DNAshapeR can be used to...

In TsuPeiChiu/DNAshapeR: High-throughput prediction of DNA shape features

Description

Encode n-st order shape features DNAshapeR can be used to generate feature vectors for a user-defined model. The model can be a shape model. There are four structural parameters including MGW, Roll, ProT and HelT. The second order shape features are product terms of values for the same category of shape features at adjacent positions.

Usage

encodeNstOrderShape(n, shapeMatrix, shapeType)

Arguments

n	A number indicating n-st order shape encoding
shapeMatrix	A matrix containing DNAshape prediction result
shapeType	A character name of shape (MGW, Roll, ProT, HelT) features

Value

featureVector A matrix containing encoded features. shape feature is represented as continuous numbers

Author(s)

Tsu-Pei Chiu

TsuPeiChiu/DNAshapeR documentation built on July 6, 2021, 9:07 p.m.