Man pages for TsuPeiChiu/DNAshapeR
High-throughput prediction of DNA shape features
| convertMethFile | Convert fasta file to methylated file format |
| DNAshapeR-package | DNAshapeR package for high-throughput prediction of DNA shape... |
| encodeKmerHbond | encode Hbond |
| encodeKMerSeq | Encode k-mer DNA sequence features |
| encodeNstOrderShape | Encode n-st order shape features DNAshapeR can be used to... |
| encodeSeqShape | Encode k-mer DNA sequence and n-th order DNA Shape features |
| getFasta | Extract fasta sequence given a set of genomic intervals and a... |
| getShape | Predict DNA shape from a FASTA file |
| heatShape | Plot heatmap of DNA shape features |
| normalize | Min-Max normalization |
| normalizeShape | Normalize n-st order shape features |
| plotShape | Plot metaprofiles of DNA shape features |
| readNonStandardFastaFile | Read the position fasta file |
| readShape | Read (parse) DNA shape predictions |
| trackShape | Plot track view of DNA shape features |
