README.md

In Tuteja-Lab/TissueEnrich: Tissue-specific gene enrichment analysis

TissueEnrich: R package to carry out tissue-specific gene enrichment.

Citation

If you use TissueEnrich in published research, please cite:

Jain, A, Tuteja, G. (2018) TissueEnrich: Tissue-specific gene enrichment analysis. Bioinformatics, bty890. 10.1093/bioinformatics/bty890

Requirement

You need R version above 3.5 to run this application. Other dependencies are:

• dplyr (>= 0.7.3)
• ensurer (>= 1.1)
• ggplot2 (>= 2.2.1)
• tidyr (>=0.8.0)
• SummarizedExperiment (>= 1.6.5)
• GSEABase (>= 1.38.2)

How to install the R package

From Bioconductor BiocManager::install("TissueEnrich")

From Github Install Dependencies install.packages(c("dplyr","ensurer","ggplot2","tidyr")) install.packages("BiocManager") BiocManager::install("SummarizedExperiment") BiocManager::install("GSEABase") Now install the devtools package install.packages("devtools") library(devtools) * Run command install_github("Tuteja-Lab/TissueEnrich")

More about the package

• Check more details about the package in the vignette vignette("TissueEnrich")

Tuteja-Lab/TissueEnrich documentation built on March 26, 2022, 9:29 a.m.