API for Tveten/capacc
Collective and point anomalies in cross-correlated data
| Global functions | |
|---|---|
| BIC_precision_mat | Source code |
| B_compare | Source code |
| CAR_func | Source code |
| CAR_with_nugget_func | Source code |
| MLE_compare | Source code |
| MLE_compare_dt | Source code |
| PiS | Man page Source code |
| PiW | Man page Source code |
| Wishart_precision | Source code |
| aMLE_bound | Source code |
| aMLE_vs_iid | Source code |
| acc | Source code |
| add_changing_variance | Source code |
| add_iid_costs | Source code |
| add_precision_est_struct_to_cost | Source code |
| adjacency_mat | Source code |
| adjacent_dist | Source code |
| adjust_files_sd_changes | Source code |
| adjusted_penalty | Source code |
| adjusted_rand_index | Source code |
| all_changing_var_runs | Source code |
| all_cpt_est_runs | Source code |
| all_multiple_anom_runs10 | Source code |
| all_multiple_anom_runs100 | Source code |
| all_small_classify_runs | Source code |
| all_subset_est_runs | Source code |
| already_estimated | Source code |
| anomalies_from_cpt | Source code |
| approx_savings_prunable | Source code |
| ar_cor_mat | Source code |
| ar_precision_mat | Source code |
| assert_cov_mat | Source code |
| assert_equal_ncol | Source code |
| assert_integer_in_interval | Source code |
| bacc | Source code |
| backtrack_u_max | Source code |
| band | Source code |
| band_from_list | Source code |
| banded_neighbours | Source code |
| block_precision_mat | Source code |
| boxplot_cpt_est | Source code |
| capa.cc | Man page Source code |
| capa_line_plot | Source code |
| capa_tile_plot | Source code |
| capacc | Source code |
| capaccR | Source code |
| capacc_exact | Source code |
| capacc_sparse | Source code |
| car_mat_from_type | Source code |
| car_precision_mat | Man page Source code |
| centralise | Source code |
| changing_var_results | Source code |
| changing_var_runs | Source code |
| changing_var_setup | Source code |
| classify_anom | Source code |
| collective_anomalies | Source code |
| collective_anomaliesR | Source code |
| combine_lists | Source code |
| compare_BF_MLE | Source code |
| compare_CM_alg | Source code |
| compare_OP_BF2 | Source code |
| compare_many_times | Source code |
| compare_signal_strength | Source code |
| compute.test.errors | Source code |
| compute.threshold | Man page Source code |
| const_penalty | Source code |
| constant_cor_mat | Source code |
| constant_cor_mat2 | Source code |
| convert.design.matrix.one.change | Source code |
| cor_inspect | Man page Source code |
| cost_names_graphics | Source code |
| cost_pruned_expand_grid | Source code |
| count_binary_tfp | Source code |
| count_collective_anomalies | Source code |
| count_leading | Source code |
| count_nz_columns | Source code |
| count_rand_tfp | Source code |
| count_tfp_anom | Source code |
| cpt.cc | Man page Source code |
| cpt_distr_title_parts | Source code |
| cpt_est_runs | Source code |
| cpt_est_setup | Source code |
| cptcc | Source code |
| curve_params | Source code |
| cusum.transform | Man page Source code |
| cuthill_mckee | Man page Source code |
| dense_mvnormal_savings | Source code |
| dense_savings2 | Source code |
| dot_every | Source code |
| dp.gam.function | Source code |
| dp.gam.list | Source code |
| dp.main | Source code |
| dp.main.function | Source code |
| dp.matrix.function | Source code |
| dp.pull.change | Source code |
| est_power | Source code |
| est_power_known | Source code |
| estimate_CAR_precision_mat | Source code |
| estimate_sparse_precision_mat | Source code |
| expand_indicator | Source code |
| expand_list | Source code |
| expected_savings | Source code |
| extended_indicator_set | Source code |
| extended_lower_nbs | Source code |
| extract_nested_element | Source code |
| extract_nested_elements | Source code |
| find.one.change.grouplasso | Source code |
| find_threshold | Source code |
| format_data | Source code |
| generate_change | Source code |
| get_Q | Source code |
| get_Q_hat | Source code |
| get_S | Source code |
| get_adj_mat | Source code |
| get_affected_dims | Source code |
| get_neighbours_less_than | Source code |
| get_p_false_file_name | Source code |
| get_p_false_file_name2 | Source code |
| get_penalty | Source code |
| get_penalty_scales | Source code |
| get_penalty_scales2 | Source code |
| get_penalty_vec | Source code |
| get_previous_seed | Source code |
| get_sim_seeds | Source code |
| get_tfp_file_name | Source code |
| get_tuned_penalty | Source code |
| get_w | Source code |
| glasso_precision_mat | Source code |
| grid_plot | Source code |
| grid_plot_cpt_est | Source code |
| group.lasso.test.error | Source code |
| identity | Source code |
| iid_penalty | Source code |
| iid_point_penalty | Source code |
| indicator | Source code |
| indicator_power_set | Source code |
| inds_from_intervals | Source code |
| init_data | Source code |
| init_data_ | Source code |
| init_data_mc | Source code |
| init_indexing_func | Source code |
| init_precision_mat | Source code |
| init_setup | Source code |
| init_setup_MLE | Source code Source code |
| is_equal | Source code |
| is_in_interval | Source code |
| is_positive_definite | Source code |
| is_whole_number | Source code |
| is_zero | Source code |
| k_star | Source code |
| label_anom_est | Source code |
| lattice_neighbours | Source code |
| linear_penalty | Source code |
| local.group | Source code |
| locate.change | Man page Source code |
| lower_nbs | Source code |
| main1 | Source code |
| main2 | Source code |
| make_title | Source code |
| many_classifications | Source code |
| many_cpt_est | Man page Source code |
| many_power_curves | Source code |
| many_subset_est | Man page Source code |
| method_params | Source code |
| method_params_ | Source code |
| min_duration | Source code |
| mse_cpt_est | Source code |
| mu_MLE | Source code |
| mu_aMLE | Source code |
| mu_from_vartheta | Source code |
| multi_anom_row | Source code |
| multi_anom_table | Source code |
| multiple_anom_runs | Source code |
| multiple_anom_setup | Source code |
| mvcapa_1anom | Source code |
| mvcapa_1anom2 | Source code |
| mvcapa_1anom_MLE | Source code |
| normalised_savings | Source code |
| number_neighbours | Source code |
| off_diag | Source code |
| off_diag_ind | Source code |
| optim_mvnormal_savings_test | Source code |
| optim_penalised_savings_c | Source code |
| optim_penalised_savings_c_old | Source code |
| optim_penalised_savings_c_test | Source code |
| optim_savings_memory_test | Source code |
| optim_test | Source code |
| optimal_mvnormal_dense_saving | Source code |
| optimise_mvnormal_iid_saving | Source code |
| optimise_mvnormal_lr | Source code |
| optimise_mvnormal_saving | Source code |
| optimise_mvnormal_saving_BF | Source code |
| optimise_subset_AR1_SN | Source code |
| p_false | Source code |
| p_false2 | Source code |
| penalised_savings_BF | Source code |
| penalised_savings_BF_old | Source code |
| penalised_savings_ar | Source code |
| penalised_savings_ar1 | Source code |
| penalised_savings_ar1_NB1 | Source code |
| penalised_savings_ar1_NB2 | Source code |
| penalised_savings_ar1_OP | Source code |
| penalised_savings_car | Source code |
| penalised_savings_car_aMLE | Source code |
| penalised_savings_car_old | Source code |
| penalties_title_parts | Source code |
| penalty_func | Source code |
| perf_metric_texts | Source code |
| pll_test | Source code |
| plot.capacc | Man page Source code |
| plot_K_hat | Source code |
| plot_cpt_distr | Source code |
| plot_cpt_ests | Source code |
| plot_expected_saving | Source code |
| plot_penalty | Source code |
| plot_penalty_func | Source code |
| plot_power_curve | Source code |
| point_anomalies | Source code |
| point_anomaliesR | Source code |
| power.method | Man page Source code |
| power_curve | Source code |
| power_curve_title_parts | Source code |
| power_set | Source code |
| precision | Source code |
| print_iterations | Source code |
| print_progress | Source code |
| profile_capacc | Source code |
| rK_hat | Source code |
| rK_hat_for | Source code |
| radjacency_mat | Source code |
| rand_counts_mvcapa | Source code |
| random_neighbours | Source code |
| rcor_mat | Source code |
| read_anom_class | Source code |
| read_cpt_est | Source code |
| read_cpt_est_res | Source code |
| read_penalties | Source code |
| read_penalties_known | Source code |
| read_power_curve | Source code |
| read_power_curve_known | Source code |
| read_results | Source code |
| read_single_result | Source code |
| read_subset_est | Source code |
| recall | Source code |
| reg_mat | Source code |
| remaining_neighbours_below | Source code |
| rename_cost | Source code |
| rename_precision_est_struct | Source code |
| rename_shape | Source code |
| rename_shape2 | Source code |
| res.and.gam | Source code |
| res.at.t | Source code |
| rescale.variance | Man page Source code |
| residualvar | Source code |
| robust_cov_mat | Source code |
| robust_scale | Source code |
| robust_sparse_precision | Man page Source code |
| robust_sparse_precision_slow | Source code |
| robust_whitening | Source code |
| run_MLE_sim | Source code |
| run_all | Source code |
| run_and_save_p_false_dt | Source code |
| run_and_save_p_false_dt2 | Source code |
| run_prunable | Source code |
| run_sim | Source code |
| runtime_vardp | Source code |
| save_grid_plot | Source code |
| save_plot_penalty_func | Source code |
| save_simple_example | Source code |
| save_visualise_cor_mat | Source code |
| saving_iid | Source code |
| savings | Source code |
| savings_difference | Source code |
| select_precision_mat | Source code |
| setup_parallel | Source code |
| signal_strength2 | Source code |
| sim_aMLE_bound | Source code |
| sim_cpt_est | Source code |
| sim_roc | Source code |
| sim_subset_est | Source code |
| sim_variable_classification | Source code |
| simple_example | Source code |
| simple_examples_paper | Source code |
| simple_examples_presentation | Source code |
| simulate_cor | Man page Source code |
| simulate_cor_ | Source code |
| simulate_detection | Source code |
| simulate_detection_known | Source code |
| simulate_mvcapa_1anom | Source code |
| simulate_mvcapa_1anom2 | Source code |
| simulate_mvcapa_1anom_MLE | Source code |
| simulate_mvcapa_iid | Source code |
| single_cor_inspect | Man page Source code |
| small_classify_results | Source code |
| small_classify_runs | Source code |
| small_classify_setup | Source code |
| sort_indicators | Source code |
| sparse.svd | Man page Source code |
| split_lists | Source code |
| split_params | Source code |
| standardise_precision_mat | Source code |
| stop_parallel | Source code |
| subset_and_check | Source code |
| subset_est_runs | Source code |
| subset_est_setup | Source code |
| subset_est_table | Source code |
| subset_from_indicator | Source code |
| subsets_from_indicators | Source code |
| symmetric_from_lower_tri | Source code |
| test.res.group.lasso | Source code |
| test_MLE_greater | Source code |
| test_conditions | Source code |
| test_optim | Source code |
| test_precision_copy | Source code |
| test_precision_move | Source code |
| test_runtime | Source code |
| time_test | Source code |
| to_array | Source code |
| train.res.group.lasso | Source code |
| true_false_positives | Source code |
| true_labels | Source code |
| tune_many | Source code |
| tune_penalty | Source code |
| tuning_params | Source code |
| var_pgl | Source code |
| vartheta_from_mu | Source code |
| vector.norm | Man page Source code |
| vector.soft.thresh | Man page Source code |
| visualise_cor_mat | Source code |
| which_rows_correspond | Source code |
| zero_inds | Source code |
