UBod/procoil: Prediction of Oligomerization of Coiled Coil Proteins

The package allows for predicting whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. Additionally to the prediction itself, a prediction profile is computed which allows for determining the strengths to which the individual residues are indicative for either class. Prediction profiles can also be visualized as curves or heatmaps.

Getting started

Package details

AuthorUlrich Bodenhofer
Bioconductor views Classification Proteomics SupportVectorMachine
MaintainerUlrich Bodenhofer <[email protected]>
LicenseGPL (>= 2)
Version2.9.0
URL http://www.bioinf.jku.at/software/procoil/ https://github.com/UBod/procoil
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("UBod/procoil")
UBod/procoil documentation built on May 16, 2018, 12:24 a.m.