NEWS.md

In UCLouvain-CBIO/depmap: Cancer Dependency Map Data Package

depmap 1.19

Changes in version 1.19.1

• Added 24Q2 data to dmsets and dmfiles to enable latest data to be analyzed

Changes in version 1.19.0

• New devel version.

depmap 1.17

Changes in version 1.17.5

• Check if there's internet connectivity before creating hub accessors.

Changes in version 1.17.4

• Fix .onLoad() to create Hub accessors for all experiments, including older versions.

Changes in version 1.17.3

• Bump version to publish latest vignette updates.

Changes in version 1.17.2

• Add new section on dmsets() and dmfiles(). <2024-02-26 Mon>

Changes in version 1.17.1

• New depmap datasets and files infrastructure to directly download individual files. See ?DepMapFiles for details. <2024-02-25 Sun>

Changes in version 1.17.0

• New devel version.

depmap 1.11

Changes in version 1.11.2

• 22Q2 data added for crispr, copyNumber, TPM, mutationCalls, metadata and achilles datasets. Note: 22Q2 is the last release to follow a quarterly release schedule. Future Depmap releases will follow a bi-annual release schedule with dataset updates every 6 months.

Changes in version 1.11.1

• EH numbers have been updated in the latest dataset (see #78)

depmap 1.9

Changes in version 1.9.2

• 22Q1 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. New datasets were added, including gene_summaries and achilles describing Depmap Achilles screens and gene essentiality probabilities, respectively. New loading functions were created for these datasets. Newer versions for the other datasets were not released.

Changes in version 1.9.1

• 21Q4 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. Newer versions for the other datasets were not released.

Changes in version 1.9.0

• New devel version for Bioc 3.15

Changes in version 1.7.1

• 21Q3 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. Newer versions for the other datasets were not released.
• CERES CRISPR data has been deprecated and has been replaced with Chronos CRISPR dependency in 21Q3 and all future releases. For more information, see: https://cancerdatascience.org/blog/posts/ceres-chronos/

Changes in version 1.7.0

• New Bioc devel release.

depmap 1.5

Changes in version 1.5.3

• 21Q2 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. Newer versions for the other datasets were not released.
• Additional compound metadata was added to drug_dependency_19Q3
• ensembl_id to entrez_id in TPM data was corrected for datasets stored on EH

Changes in version 1.5.2

• 21Q1 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. Newer versions for the other datasets were not released.
• Loading function bug was fixed.
• Fix ensembl_id to entrez_id in TPM data (see #64)

Changes in version 1.5.1

• 20Q4 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. Newer versions for the other datasets were not released.

Changes in version 1.5.0

• New Bioc devel verison

depmap 1.3

Changes in version 1.3.2

• 20Q3 data added for crispr, copyNumber, TPM, mutationCalls and metadata datasets. Newer versions for the other datasets were not released.

Changes in version 1.3.1

• 20Q2 data added
• Included new proteomic dataset
• expression variable in TPM dataset changed to rna_expression

depmap 1.1

Changes in version 1.1.3

• The using_depmap vignette has been updated to illustrate how to visualize depmap data using ggplot2.

Changes in version 1.1.2

• 20Q1 data added

Changes in version 1.1.1

• 19Q4 data added
• Updated loading functions (accessor functions)
• 19Q4 versions of rnai, RPPA and drug_sensitivity were not released for this quarter, and therefore the 19Q3 releases for these datasets are the most current versions.

depmap 0.99

Changes in version 0.99.5

• 19Q3 data added
• Included new drug_sensitivity dataset

Changes in version 0.99.4

• 19Q2 data added
• Package submitted to Bioconductor
• New data loading functions (accessor functions)

Changes in version 0.99.0

• 19Q1 data added
• Preparing for Bioconductor submission

UCLouvain-CBIO/depmap documentation built on Aug. 18, 2024, 9:46 p.m.