kem: KEM RNA-Seq data
In UCLouvain-CBIO/rWSBIM1207: Companion Package for WSBIM1207 Course
kem R Documentation
KEM RNA-Seq data
Description
This data is composed of three files, namely kem_counts.tsv,
kem_counts2.tsv, containing counts data and the annotation file
kem_annot.tsv containing the annotations the KEM samples. Both
files are encoded as tab-separtated sheets and can be found with the
kem.tsv() function.
Credit: the data have been generated by Mr Kevin Missault.
Format
The RNA-Seq count data for 13 ENSEMBL transcripts (ref) and 16 KEM
samples is encoded as:
refENSEMBL transcript identifiers.
- ‘KEM182-01’
Expression counts for all genes in sample KEM182-01.
- ‘KEM182-02’
Expression counts for all genes in sample KEM182-02.
- ‘KEM182-03’
Expression counts for all genes in sample KEM182-03.
- ‘KEM182-04’
Expression counts for all genes in sample KEM182-04.
- ‘KEM182-05’
Expression counts for all genes in sample KEM182-05.
- ‘KEM182-06’
Expression counts for all genes in sample KEM182-06.
- ‘KEM182-07’
Expression counts for all genes in sample KEM182-07.
- ‘KEM182-08’
Expression counts for all genes in sample KEM182-08.
- ‘KEM182-09’
Expression counts for all genes in sample KEM182-09.
- ‘KEM182-10’
Expression counts for all genes in sample KEM182-10.
- ‘KEM182-11’
Expression counts for all genes in sample KEM182-11.
- ‘KEM182-12’
Expression counts for all genes in sample KEM182-12.
- ‘KEM182-13’
Expression counts for all genes in sample KEM182-13.
- ‘KEM182-14’
Expression counts for all genes in sample KEM182-14.
- ‘KEM182-15’
Expression counts for all genes in sample KEM182-15.
- ‘KEM182-16’
Expression counts for all genes in sample KEM182-16.
The kem_counts2.tsv file contains counts data for 4774 features.
The annotation contains the following variables for the 16 observations:
sample_idSample identifier.
jurkatA character (yes or no) defining of the cells a Jurkat cells.
cell_typeJurkat cell type (A or B).
treatmentTreatment: either none or stimulated.
Examples
kem.tsv()
kem2.tsv()
kem3.tsv()
UCLouvain-CBIO/rWSBIM1207 documentation built on March 20, 2024, 4:20 a.m.
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| kem | R Documentation |
KEM RNA-Seq data
Description
This data is composed of three files, namely kem_counts.tsv,
kem_counts2.tsv, containing counts data and the annotation file
kem_annot.tsv containing the annotations the KEM samples. Both
files are encoded as tab-separtated sheets and can be found with the
kem.tsv() function.
Credit: the data have been generated by Mr Kevin Missault.
Format
The RNA-Seq count data for 13 ENSEMBL transcripts (ref) and 16 KEM samples is encoded as:
refENSEMBL transcript identifiers.
- ‘KEM182-01’
Expression counts for all genes in sample KEM182-01.
- ‘KEM182-02’
Expression counts for all genes in sample KEM182-02.
- ‘KEM182-03’
Expression counts for all genes in sample KEM182-03.
- ‘KEM182-04’
Expression counts for all genes in sample KEM182-04.
- ‘KEM182-05’
Expression counts for all genes in sample KEM182-05.
- ‘KEM182-06’
Expression counts for all genes in sample KEM182-06.
- ‘KEM182-07’
Expression counts for all genes in sample KEM182-07.
- ‘KEM182-08’
Expression counts for all genes in sample KEM182-08.
- ‘KEM182-09’
Expression counts for all genes in sample KEM182-09.
- ‘KEM182-10’
Expression counts for all genes in sample KEM182-10.
- ‘KEM182-11’
Expression counts for all genes in sample KEM182-11.
- ‘KEM182-12’
Expression counts for all genes in sample KEM182-12.
- ‘KEM182-13’
Expression counts for all genes in sample KEM182-13.
- ‘KEM182-14’
Expression counts for all genes in sample KEM182-14.
- ‘KEM182-15’
Expression counts for all genes in sample KEM182-15.
- ‘KEM182-16’
Expression counts for all genes in sample KEM182-16.
The kem_counts2.tsv file contains counts data for 4774 features.
The annotation contains the following variables for the 16 observations:
sample_idSample identifier.
jurkatA character (yes or no) defining of the cells a Jurkat cells.
cell_typeJurkat cell type (A or B).
treatmentTreatment: either none or stimulated.
Examples
kem.tsv()
kem2.tsv()
kem3.tsv()
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