kem | R Documentation |
This data is composed of three files, namely kem_counts.tsv
,
kem_counts2.tsv
, containing counts data and the annotation file
kem_annot.tsv
containing the annotations the KEM samples. Both
files are encoded as tab-separtated sheets and can be found with the
kem.tsv()
function.
Credit: the data have been generated by Mr Kevin Missault.
The RNA-Seq count data for 13 ENSEMBL transcripts (ref) and 16 KEM samples is encoded as:
ref
ENSEMBL transcript identifiers.
Expression counts for all genes in sample KEM182-01.
Expression counts for all genes in sample KEM182-02.
Expression counts for all genes in sample KEM182-03.
Expression counts for all genes in sample KEM182-04.
Expression counts for all genes in sample KEM182-05.
Expression counts for all genes in sample KEM182-06.
Expression counts for all genes in sample KEM182-07.
Expression counts for all genes in sample KEM182-08.
Expression counts for all genes in sample KEM182-09.
Expression counts for all genes in sample KEM182-10.
Expression counts for all genes in sample KEM182-11.
Expression counts for all genes in sample KEM182-12.
Expression counts for all genes in sample KEM182-13.
Expression counts for all genes in sample KEM182-14.
Expression counts for all genes in sample KEM182-15.
Expression counts for all genes in sample KEM182-16.
The kem_counts2.tsv
file contains counts data for 4774 features.
The annotation contains the following variables for the 16 observations:
sample_id
Sample identifier.
jurkat
A character (yes or no) defining of the cells a Jurkat cells.
cell_type
Jurkat cell type (A or B).
treatment
Treatment: either none or stimulated.
kem.tsv()
kem2.tsv()
kem3.tsv()
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