NEWS.md

In UCLouvain-CBIO/scpdata: Single-Cell Proteomics Data Package

scpdata 1.13

scpdata 1.13.1

• New datasets: krull2024, hu2023_K562 and hu2023_oocyte and fixed khan2023 imputed data.

scpdata 1.13.0

• New Bioconductor 3.20 (devel) release

scpdata 1.12

scpdata 1.12.0

• New Bioconductor 3.19 (stable) release

scpdata 1.11

scpdata 1.11.4

• fix non-ASCII characters
• split data.R into multiple data specific files

scpdata 1.11.3

• leduc2022_pSCoPE: added cellenONE annotations
• guise2024: added dataset

scpdata 1.11.2

• khan2023: added dataset.

scpdata 1.11.1

• Added contribution vignette.
• gregoire2023_mixCTRL: added dataset.

scpdata 1.9

scpdata 1.9.2

• woo2022: added woo2022_lung and woo2022_macrophage
• leduc2022: added leduc2022_plexDIA and renamed leduc2022 to leduc2022_pSCoPE

scpdata 1.9.1

• Updated citation

scpdata 1.9.0

• New Bioconductor 3.18 (devel) release

scpdata 1.8

scpdata 1.8.0

• New Bioconductor 3.17 (stable) release

scpdata 1.7

scpdata 1.7.0

• New Bioconductor 3.17 (devel) release

scpdata 1.6

scpdata 1.6.0

• New Bioconductor 3.16 (stable) release

scpdata 1.5

scpdata 1.5.6

scpdata 1.5.5

• Added package sticker

scpdata 1.5.4

• fix: fixed character encoding errors

scpdata 1.5.3

• tests: make sure each dataset is available
• docs: don't run examples. They take too long and crash the checks.

scpdata 1.5.2

• Added CITATION

scpdata 1.5.1

• brunner2022: added dataset
• derks2022: added dataset
• add license statements
• leduc2022: added dataset

scpdata 1.5.0

• New devel (Bioc 3.16)

scpdata 1.4

• New stable release (Bioc 3.15)

scpdata 1.3

scpdata 1.3.1

• williams2020: added 2 new datasets (need to be sent to EH)
• all: added supplementary metadata fields in metadata.csv.
• zhu2019EL: split protein data into protein_intensity and protein_iBAQ
• dou2019: modified peptide data by excluding low-quality PSMs

scpdata 1.3.0

• New devel (Bioc 3.15)

scpdata 1.2

scpdata 1.2.0

• New stable release (Bioc 3.14)

scpdata 1.1

scpdata 1.1.2

• dou2019_*: Fixed duplicated data, added identification score and probabilities data, and generated peptide data.
• zhu2018MCP: added protein data (intensity, LFQ and iBAQ)
• zhu2018NC_*: added protein data (intensity, LFQ and iBAQ)
• metadata: included additional meta fields: PreprocessingSoftware and LabelingProtocol

scpdata 1.1.1

• Added the schoof2021 dataset <2021-10-06>

scpdata 1.1.0

• New devel (Bioc 3.14)

scpdata 1.0

scpdata 1.0.0

• New stable release (Bioc 3.13)

scpdata 0.99

scpdata 0.99.3

• Updated documentation <2021-05-03>
• Added liang2020_hela dataset <2021-04-23>

scpdata 0.99.2

• Removed remaining tilde (U+223C) in man pages <2021-01-09>

scpdata 0.99.1

• Removed tilde (U+223C) in man pages <2021-01-09>

scpdata 0.99.0

• Bioconductor submission <2021-01-06>

UCLouvain-CBIO/scpdata documentation built on Oct. 29, 2024, 4:22 p.m.