ai2025a: Ai et al., Cardiomyocytes Single Cell Proteomics, MCP (2025)
In UCLouvain-CBIO/scpdata: Single-Cell Proteomics Data Package
ai2025a R Documentation
Ai et al., Cardiomyocytes Single Cell Proteomics, MCP (2025)
Description
The manuscript analysed cardiomyocytes derived from iPSC cells and adult
hearts. This annotated QFeatures objects contains the complete data, as
analysed with the scp package. The re-analysis was performed as part of
the EuBIC 2025 developer meeting hackathon dedicated to single-cell
proteomics data (https://lgatto.github.io/2025-EuBIC-SCP-hackathon/).
The data contains a total of 304 assay. The 299 first assays contain the
individual single cardiomyocytes acquistions. The following assays contain
the joined precursor data, the log-transformed precuror data, the peptide
data, the protein data, and the scplainer-modelled precursor data (see the
link above for details).
The QFeatures object was generated from the DIA-NN report file, available
from the MsDataHub package (see ?MsDataHub::Ai2025_aCMs_report.tsv). The
report file is downloaded from the MassIVE MSV000094438
(doi:10.25345/C5T727S7Q) repository.
Usage
ai2025a
Format
An object of class function of length 1.
References
Ai, Lizhuo, Aleksandra Binek, Vladimir Zhemkov, Jae Hyung Cho, Ali
Haghani, Simion Kreimer, Edo Israely, et al. 2025. “Single Cell Proteomics
Reveals Specific Cellular Subtypes in Cardiomyocytes Derived from Human
iPSCs and Adult Hearts.” Molecular & Cellular Proteomics: MCP, no. 100910
(January): 100910.
Examples
ai2025a()
UCLouvain-CBIO/scpdata documentation built on April 12, 2025, 5:46 a.m.
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| ai2025a | R Documentation |
Ai et al., Cardiomyocytes Single Cell Proteomics, MCP (2025)
Description
The manuscript analysed cardiomyocytes derived from iPSC cells and adult
hearts. This annotated QFeatures objects contains the complete data, as
analysed with the scp package. The re-analysis was performed as part of
the EuBIC 2025 developer meeting hackathon dedicated to single-cell
proteomics data (https://lgatto.github.io/2025-EuBIC-SCP-hackathon/).
The data contains a total of 304 assay. The 299 first assays contain the individual single cardiomyocytes acquistions. The following assays contain the joined precursor data, the log-transformed precuror data, the peptide data, the protein data, and the scplainer-modelled precursor data (see the link above for details).
The QFeatures object was generated from the DIA-NN report file, available
from the MsDataHub package (see ?MsDataHub::Ai2025_aCMs_report.tsv). The
report file is downloaded from the MassIVE MSV000094438
(doi:10.25345/C5T727S7Q) repository.
Usage
ai2025a
Format
An object of class function of length 1.
References
Ai, Lizhuo, Aleksandra Binek, Vladimir Zhemkov, Jae Hyung Cho, Ali Haghani, Simion Kreimer, Edo Israely, et al. 2025. “Single Cell Proteomics Reveals Specific Cellular Subtypes in Cardiomyocytes Derived from Human iPSCs and Adult Hearts.” Molecular & Cellular Proteomics: MCP, no. 100910 (January): 100910.
Examples
ai2025a()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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