mutations_from_vcf: Retrieve base substitutions from vcf
In UMCUGenetics/MutationalPatterns: Comprehensive genome-wide analysis of mutational processes
View source: R/mutations_from_vcf.R
mutations_from_vcf R Documentation
Retrieve base substitutions from vcf
Description
A function to extract base substitutions of each position in vcf
Usage
mutations_from_vcf(vcf)
Arguments
vcf
A CollapsedVCF object
Value
Character vector with base substitutions
See Also
read_vcfs_as_granges
Examples
## See the 'read_vcfs_as_granges()' example for how we obtained the
## following data:
vcfs <- readRDS(system.file("states/read_vcfs_as_granges_output.rds",
package = "MutationalPatterns"
))
muts <- mutations_from_vcf(vcfs[[1]])
UMCUGenetics/MutationalPatterns documentation built on Nov. 24, 2022, 4:31 a.m.
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View source: R/mutations_from_vcf.R
| mutations_from_vcf | R Documentation |
Retrieve base substitutions from vcf
Description
A function to extract base substitutions of each position in vcf
Usage
mutations_from_vcf(vcf)
Arguments
vcf |
A CollapsedVCF object |
Value
Character vector with base substitutions
See Also
read_vcfs_as_granges
Examples
## See the 'read_vcfs_as_granges()' example for how we obtained the
## following data:
vcfs <- readRDS(system.file("states/read_vcfs_as_granges_output.rds",
package = "MutationalPatterns"
))
muts <- mutations_from_vcf(vcfs[[1]])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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