cosSim: Cosine similarity

In UMCUGenetics/mutSigExtractor: Extracts SNV, indel, DBS, and SV signatures from vcf files.

Cosine similarity

Description

Calculate cosine similarity between two vectors of the same length, or cosine similarity between two matrices

Usage

cosSim(x, ...)

## Default S3 method:
cosSim(x, y)

## S3 method for class 'matrix'
cosSim(x, y, all.vs.all = FALSE, by.row = TRUE)

## S3 method for class 'data.frame'
cosSim(...)

Arguments

x	A numeric vector or matrix
y	A numeric vector or matrix
all.vs.all	(When x and y are matrices) If TRUE, all rows of x are compared with all rows of y. If FALSE, rows of x are compared with rows of y 'side-by-side'
by.row	(When x and y are matrices) If TRUE, compare rows. If FALSE, compare columns

Value

A numeric vector or matrix

Examples

set.seed(1)
x <- matrix(runif(200), nrow=20)
y <- matrix(runif(200), nrow=20)

## Works with matrices
cosSim(x, y)

## ...or vectors
cosSim(x[1,], y[1,])

UMCUGenetics/mutSigExtractor documentation built on Aug. 30, 2024, 2:12 p.m.