runDE: runDE

In UMMS-Biocore/dprofiler: Dprofiler:

runDE

Description

Run DE algorithms on the selected parameters. Output is to be used for the interactive display. Adapted from debrowser::runDE

Usage

runDE(
  data = NULL,
  metadata = NULL,
  columns = NULL,
  conds = NULL,
  params = NULL
)

Arguments

data	A matrix that includes all the expression raw counts, rownames has to be the gene, isoform or region names/IDs.
metadata	metadata
columns	a vector that includes the columns that are going to be analyzed. These columns has to match with the given data.
conds	experimental conditions. The order has to match with the column order
params	all params for the DE methods

Examples

     x <- runDE()
    

UMMS-Biocore/dprofiler documentation built on Oct. 16, 2022, 11:37 a.m.