runIterDE: runIterDE

In UMMS-Biocore/dprofiler: Dprofiler:

runIterDE

Description

Run Iterative DE algorithms on the selected parameters. Output is to be used for the interactive display.

Usage

runIterDE(
  data = NULL,
  metadata = NULL,
  columns = NULL,
  conds = NULL,
  params = NULL,
  session = NULL,
  verbose = FALSE,
  visualize_prefix = "plot"
)

Arguments

data,	A matrix that includes all the expression raw counts, rownames has to be the gene, isoform or region names/IDs
metadata,	metadata
columns,	is a vector that includes the columns that are going to be analyzed. These columns has to match with the given data.
conds,	experimental conditions. The order has to match with the column order
params,	all params for the DE methods
session,	the session
verbose,	TRUE if you want results to be printed
visualize_prefix,	the prefix of the PCA plot

Examples

    x <- runIterDE()
    

UMMS-Biocore/dprofiler documentation built on Oct. 16, 2022, 11:37 a.m.