runMultipleDE: runMultipleDE

In UMMS-Biocore/dprofiler: Dprofiler:

runMultipleDE

Description

Run DE algorithms on the selected parameters. Output is to be used for the interactive display. Multiple comparisons version of runDE.

Usage

runMultipleDE(data = NULL, columns = NULL, conds = NULL, params = NULL)

Arguments

data	A matrix that includes all the expression raw counts, rownames has to be the gene, isoform or region names/IDs.
columns	a vector that includes the columns that are going to be analyzed. These columns has to match with the given data.
conds	Multiple experimental conditions.
params	all params for the DE methods

Examples

     x <- runMultipleDE()
    

UMMS-Biocore/dprofiler documentation built on Oct. 16, 2022, 11:37 a.m.