In UNCDEPENdLab/fmri.pipeline: Analysis of fMRI Data on HPC clusters
Quickstart
Structuring outputs
$output_locations
- feat_l1_directory: location of Feat level 1 directories
- feat_l2_directory: location of Feat level 2 directories
- feat_l3_directory: location of Feat level 3 directories
- sqlite_db: location of sqlite database for tracking
- object_cache: location of .rds object to hold updated version of gpa
notes on file structure
output_directory: The directory where all outputs and processing scripts for this analysis will be stored
If output_directory ends with the analysis_name, then no subfolder will be created.
Example:
- gpa$output_directory <- "/proj/mnhallqlab/users/michael/fmri_test"
- gpa$analysis_name <- "social_trust"
- result: file.path(gpa$output_directory, gpa$analysis_name)
For $feat_l1_directory, the following variables are available to glue (see get_output_directory)
-id
-session
-run_number
-model_name
-gpa[[]] (flexible)
If consolidated = TRUE,
- All l1 models will be nested in $output_directory
UNCDEPENdLab/fmri.pipeline documentation built on April 3, 2025, 3:21 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Quickstart
Structuring outputs
$output_locations - feat_l1_directory: location of Feat level 1 directories - feat_l2_directory: location of Feat level 2 directories - feat_l3_directory: location of Feat level 3 directories - sqlite_db: location of sqlite database for tracking - object_cache: location of .rds object to hold updated version of gpa
notes on file structure output_directory: The directory where all outputs and processing scripts for this analysis will be stored
If output_directory ends with the analysis_name, then no subfolder will be created.
Example:
- gpa$output_directory <- "/proj/mnhallqlab/users/michael/fmri_test"
- gpa$analysis_name <- "social_trust"
- result: file.path(gpa$output_directory, gpa$analysis_name)
For $feat_l1_directory, the following variables are available to glue (see get_output_directory)
-id
-session
-run_number
-model_name
-gpa[[
If consolidated = TRUE,
- All l1 models will be nested in $output_directory
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.