extract_fsl_betas: function to extract voxelwise betas from a given level of FSL...

In UNCDEPENdLab/fmri.pipeline: Analysis of fMRI Data on HPC clusters

function to extract voxelwise betas from a given level of FSL analysis

Description

function to extract voxelwise betas from a given level of FSL analysis

Usage

extract_fsl_betas(
  gpa,
  extract = NULL,
  level = NULL,
  what = c("cope", "zstat"),
  aggregate = TRUE,
  aggFUN = mean,
  remove_zeros = TRUE,
  mask_file = NULL,
  ncores = 1L,
  scheduler = "local",
  lg = NULL
)

Arguments

gpa	a glm_pipeline_arguments object
level	which level to extract: 1, 2, 3
what	which elements of the FEAT output should be extracted. Default is cope and zstat
aggregate	whether to aggregate voxels within each parcel
aggFUN	the function to use for aggregating voxels within a parcel
remove_zeros	whether to remove statistics that are very close to zero (and may thus represent masked-out voxels)
mask_file	a nifti image containing integer values for each parcel from which we should extract statistics
ncores	the number of cores to use for image extraction. Default: 1
lg	a Logger object for logging beta extraction

UNCDEPENdLab/fmri.pipeline documentation built on April 3, 2025, 3:21 p.m.