fsl_l1_model: This function specifies a first-level GLM model in FSL based...

In UNCDEPENdLab/fmri.pipeline: Analysis of fMRI Data on HPC clusters

This function specifies a first-level GLM model in FSL based on a build_design_matrix bdm object.

Description

This function specifies a first-level GLM model in FSL based on a build_design_matrix bdm object.

Usage

fsl_l1_model(
  id = NULL,
  session = NULL,
  l1_confound_files = NULL,
  d_obj,
  gpa,
  model_name = NULL,
  run_nifti = NULL,
  nvoxels = NULL,
  execute_feat = FALSE
)

Arguments

d_obj	a single-subject design matrix object generated by build_design_matrix
gpa	a gpa (glm_pipeline_arguments) object generated by setup_glm_pipeline
model_name	a string indicating the model name within gpa to setup. If you wish to setup multiple models, this is handled upstream in setup_l1_models.R
run_nifti	an optional character vector of NIfTI filenames used in l1 analysis. Prefer to pass these via the build_design_matrix object in $run_nifti

Author(s)

Michael Hallquist

UNCDEPENdLab/fmri.pipeline documentation built on April 3, 2025, 3:21 p.m.