get_output_directory: small helper function to return the location of an l1...

In UNCDEPENdLab/fmri.pipeline: Analysis of fMRI Data on HPC clusters

small helper function to return the location of an l1 directory based on id, session, and run number

Description

small helper function to return the location of an l1 directory based on id, session, and run number

Usage

get_output_directory(
  id = NULL,
  session = NULL,
  run_number = NULL,
  l1_model = NULL,
  l2_model = NULL,
  l3_model = NULL,
  l1_contrast = NULL,
  l2_contrast = NULL,
  l3_contrast = NULL,
  what = "l1",
  gpa,
  glm_software = "fsl",
  create_if_missing = FALSE
)

Arguments

id	The id of a participant
session	The session number to lookup
run_number	The run number to lookup
gpa	A glm_pipeline_arguments object
glm_software	which software is being used for the analysis (since directories may vary)
create_if_missing	whether to create the directory if it does not exist

UNCDEPENdLab/fmri.pipeline documentation built on April 3, 2025, 3:21 p.m.