Man pages for USAID-OHA-SI/mindthegap
Mind the Gap
| add_pepfar_rollup | Add PEPFAR Rollup |
| adorn_annotation | Add Annotation to a ggplot Object |
| apply_indicator_type | Apply Indicator Type |
| base_gray | Base gray for plot elements |
| base_plot | 95's Table Plot |
| blue_palette | Blue palette |
| calc_95_goals | Calculate the 95 targets for relative/plhiv base |
| calculate_axis_limits | Calculate Axis Limits |
| caption_gray | Text gray for plot caption |
| clean_cols | Clean Columns Reorder and rename columns |
| combo_plot | Combo Plot |
| construct_epi_plot | Construct Epidemic Control Plot |
| convert_numeric_string | Convert Numeric Values stored as string |
| epi_plot | Epidemic Control Plot |
| expected_ind | Full list of expected indicators |
| flag_95s | Flag 95 Achievement |
| flag_epi | Flag Epi contol status |
| grid_gray | Grid gray for plot |
| gs_id_names | UNAIDS crosswalk ID |
| gs_id_unaids | UNAIDS Original Data Google Sheet ID |
| handle_historic | Handle the import of historic data |
| indicator_map | Mapping of EDMS Indicator Names to those used in OHA |
| load_unaids | Load tidy UNAIDS HIV Estimates and Test & Treat Data |
| map_indicator | Map working indicator name to EDMS indicator name |
| mindthegap-package | mindthegap: Mind the Gap |
| mtg_theme | Mind The Gap Plot Theme |
| munge_components | Clean up indicator and disaggregate columns |
| munge_country | Munge PEPFAR country |
| munge_edms | Clean UNAIDS Data from EDMS |
| munge_unaids | Cleaning UNAIDS Data |
| package_check | Check if package exists |
| parse_indicator | Parse indicator Standardize indicator across years and other... |
| pepfar | PEPFAR countries + ISO codes |
| pipe | Pipe operator |
| plot_connected_scatter | Plot Epidemic Control Trajectories |
| plot_epi_trends | Epidemic Control Plot |
| prepare_plot_data | Prepare Data for Plotting |
| prepare_viz_data | Prepare viz data |
| prep_epi_data | Prepare UNAIDS Epidemiological Data for Analysis |
| publish_release | Publish Tidy UNAIDS Data as a GitHub Release |
| pull_estimates | Pull clean UNAIDS HIV Estimates |
| pull_testtreat | Pull clean UNAIDS HIV Test & Treat |
| pull_unaids | Pull clean UNAIDS HIV Estimates and Test & Treat Data |
| read_edms | Import EDMS Export |
| read_rename | Import function for reading original UNAIDS estimates |
| regions | UN Defined Regions |
| req_cols | EMDS Extract Required Columns |
| source_note | UNAIDS Source Info |
| spread_values | Pivot Values Spread estimates and bounds to their own... |
| standarize_agesex | Standardize Age/Sex |
| startup_msg | Start up message |
| subset_cols | Remove extraneous columns |
| subset_epi_data | Subset data to select indicators needed |
| tab_95s | 95's Table Plot |
| unaids_year | Year UNAIDS data are released through |
| validate_columns | Validate Columns |
| validate_countries | Validate PEPFAR countries |
| validate_epi_disaggs | Validate Epi indicator/disaggs |
| validate_ind_disaggs | Validate Indicator and Disaggregated included |
| validate_numeric_string | Validate Numberic String |
| validate_path | Validate Path |
| viz_epi | Standard Epi plot |
| viz_impatt | Visualize share of PLHIV on ART |
| viz_unaids | Visualize 90-90-90 Trends from UNAIDS |
