Files in USCbiostats/partition
Agglomerative Partitioning Framework for Dimension Reduction
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/RcppExports.R
R/data.R
R/directors.R
R/mappings.R
R/metrics.R
R/mutual_information.R
R/partition.R
R/partitioners.R
R/permutation.R
R/plot.R
R/print.R
R/reducers.R
R/simulate_block.R
R/super_partition.R
R/utils-pipe.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
basic_benchmarks.rds
codecov.yml
data-raw/baxter.R
data-raw/crc_baxter.metadata.txt
data-raw/crc_baxter.otu_table.100.denovo.rdp_assigned.zip
data/baxter_clinical.rda
data/baxter_data_dictionary.rda
data/baxter_family.rda
data/baxter_genus.rda
data/baxter_otu.rda
icc_kmeans_benchmarks.rds
inst/CITATION
inst/WORDLIST
man-roxygen/describe_as_partitioner.R
man-roxygen/describe_director.R
man-roxygen/describe_metric.R
man-roxygen/describe_partitioner.R
man-roxygen/describe_reducer.R
man-roxygen/example_header.R
man-roxygen/partition_param.R
man-roxygen/partition_step.R
man-roxygen/partition_step_param.R
man/all_columns_reduced.Rd
man/all_done.Rd
man/append_mappings.Rd
man/as_director.Rd
man/as_measure.Rd
man/as_partition.Rd
man/as_partition_helpers.Rd
man/as_partition_step.Rd
man/as_partitioner.Rd
man/as_reducer.Rd
man/assign_partition.Rd
man/baxter_data.Rd
man/binary_k_search.Rd
man/build_next_name.Rd
man/calculate_new_variable.Rd
man/compare_k.Rd
man/compare_metric.Rd
man/corr.Rd
man/direct_distance.Rd
man/direct_k_cluster.Rd
man/direct_measure_reduce.Rd
man/figures/README-secret_benchmarks1-1.png
man/figures/README-secret_benchmarks2-1.png
man/figures/README-stacked_area_chart-1.png
man/figures/README-unnamed-chunk-2-1.png
man/filter_reduced.Rd
man/find_min_distance_variables.Rd
man/fit_distance_matrix.Rd
man/guess_init_k.Rd
man/handle_missing.Rd
man/hits.Rd
man/icc.Rd
man/icc_r.Rd
man/is_partition.Rd
man/is_partition_step.Rd
man/is_partitioner.Rd
man/is_same_function.Rd
man/k_exhausted.Rd
man/kmeans_helpers.Rd
man/linear_k_search.Rd
man/map_partition.Rd
man/mapping_helpers.Rd
man/mapping_key.Rd
man/matrix_is_exhausted.Rd
man/measure_icc.Rd
man/measure_min_icc.Rd
man/measure_min_r2.Rd
man/measure_std_mutualinfo.Rd
man/measure_variance_explained.Rd
man/mutual_information.Rd
man/part_icc.Rd
man/part_kmeans.Rd
man/part_minr2.Rd
man/part_pc1.Rd
man/part_stdmi.Rd
man/partition.Rd
man/partition_scores.Rd
man/paste_partitioners.Rd
man/permute_df.Rd
man/pipe.Rd
man/plot_partitions.Rd
man/plot_permutation.Rd
man/print_color.Rd
man/print_helpers.Rd
man/pull_mappings.Rd
man/reduce_first_component.Rd
man/reduce_kmeans.Rd
man/reduce_mappings.Rd
man/reduce_scaled_mean.Rd
man/reduce_target.Rd
man/replace_partitioner.Rd
man/return_if_single.Rd
man/rewind_target.Rd
man/scaled_mean.Rd
man/search_k.Rd
man/simplify_names.Rd
man/simulate_block_data.Rd
man/super_partition.Rd
man/test_permutation.Rd
man/update_dist.Rd
paper/paper.Rmd
paper/paper.html
paper/paper.md
paper/references.bib
partition.Rproj
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/corr.cpp
src/icc.cpp
src/kmeans.cpp
src/minr2.cpp
src/pca.cpp
src/reduce_partition.cpp
tests/spelling.R
tests/testthat.R
tests/testthat/helper-df.R
tests/testthat/test-mappings-and-scores-work.R
tests/testthat/test-misc-partitioner-arguments.R
tests/testthat/test-partition-objects-are-well-shaped.R
tests/testthat/test-partitioners-helpers-work.R
tests/testthat/test-partitioners-reduce-correctly.R
tests/testthat/test-permutations-return-correctly.R
tests/testthat/test-plots-are-plotting.R
tests/testthat/test-super-partition-objects.R
vignettes/.gitignore
vignettes/extending-partition.Rmd
vignettes/introduction-to-partition.Rmd
