| ACPHistoric | Current table of historic estimates for the Arctic Coastal... |
| AddClass | Add large or small flock information |
| AdjustCounts | Create index columns based on Num and Obs_Type |
| AerialDataZip | Create a .zip file of the associated observation files,... |
| AppendYear | Update one of the 5 tables of historic estimates (.rda... |
| AssignStrata | Assign strata ID to data for analysis using sf package |
| AssignTransect | Assign transect ID to data for analysis using sf package |
| BoundingByStrata | Calculate bounding boxes for each distinct stratum in a... |
| ColMatch | Check if column names are appropriate for analysis. |
| ColSwitch | Switch necessary column names |
| CombinedReport | Runs a new combination of separate and combined estimates for... |
| CombineEstimates | Combine estimates and variances for an observer crew |
| CombineEstimatesByStrata | Combine WBPHS estimates by stratum |
| CommonFix | Apply "yellow light" changes to a data set |
| CommonFixScribe | Apply "yellow light" changes to a SCRIBE data set |
| CompositeIndices | Compile index estimates for Pacific Flyway data book |
| CompositeLong | Compile index estimates for Pacific Flyway data book in one... |
| CorrectionFactor | Apply a detection correction to an index estimate |
| CorrectTrans | Replace navigational transect (tran) with corrected transect... |
| CountsTable | Summarize indices by year, observer, transect, species, and... |
| CountsWBPHS | Summarize index counts for WBPHS data by Transect and Stratum |
| CRDHistoric | Current table of historic estimates for the Copper River... |
| Cut9 | Clip stratum 9 for overlap for 3 species |
| DataProcess | Format and summarize a clean data set for analysis |
| DataSelect | Format and summarize a clean data set for analysis |
| deg2rad | Convert degrees to radians |
| Densities | Standard ratio estimator for aerial survey data |
| DistanceToDesign | Distance to the reported design transect |
| DoubleObsRandom | Derive a random double observer sampling design |
| EstimatesTable | Create a master table of estimates for an area |
| EstimatesTableWBPHS | Deprecated function to calculate index estimates for a given... |
| EstimatesWBPHS | Standard ratio estimator for WBPHS survey data |
| FindVoids | Find gaps between polygons of the same stratum type |
| FixTavs | FixTavs runs near the end of DataSelect to overwrite species... |
| GatherData | Gather all data for a project and add unique design panel... |
| gcd.slc | Spherical distance between 2 points |
| GreenLight | QA/QC checks for standardized aerial survey data |
| GreenLightScribe | QA/QC checks for standardized aerial survey data |
| LoadMap | Read .shp file and attach strata names to the object |
| MakeStateSpace | Iterate over all species and projects and create input files... |
| Mappoints2line | Display a linestring object from a series of transect... |
| MassPool | Pool data from multiple observers across all MBM surveys... |
| MassReport | Apply 'GreenLight' function to an entire folder |
| MasterFileList | Current table of archived input file names and locations for... |
| MasterFileList_WBPHS | Current table of archived input file names and locations for... |
| ObsByYear | Split an old combined data file by observer and year |
| ObserverCheck | Check if observer initials are uppercase. |
| ObsMap | Display a combination of strata, transect design, and data |
| PhotoEstimate | Produce replicate-specific photo count estimates. |
| points2line | Create a Linestring object from a series of transect... |
| PointsToStrata | Sample the polygon under an observation |
| PoolData | Combine multiple observers' transcribed files in a given year |
| popest | Title |
| popestACP | A function to calculate variance of ACP population estimates |
| random_files | Randomly sample files in a directory |
| Raw2Analysis | Check if common fixes need to be applied to a raw data file |
| ReadWBPHS | Prepare WBPHS data for index estimate calculation |
| ReportFigure | Create a basic figure from historic estimates |
| ReportTable | Create a basic exportable table from historic estimates,... |
| Scribe2Analysis | Check if common fixes need to be applied to a raw data file |
| ScribeMerge | Merge the daily SCRIBE files into a single project record for... |
| SeatCheck | Check if Seat entries are all correct |
| ShouldBeNumeric | Check if entries in a column are all numeric |
| ShowMe | Display a combination of strata, transect design, and data |
| ShowMeDesign | Display a combination of strata and transect design |
| ShowMeDouble | Display a 'DoubleObsRandom' solution |
| ShowMeTrackDesign | Display a combination of strata, transect design, and actual... |
| ShowMeUncut | Display a combination of unprocessed strata and transect... |
| ShowMeYears | Display multiple years of observation data by survey area |
| ShowWBPHS | Display observations on WBPHS segments |
| SpeciesByProject | Changes species codes based on area |
| SpeciesCheck | Check if Species column inputs are all correct |
| SpeciesTransect | Provide transect-level summaries for a given species |
| SplitDesign | Renumber design transects based on stratification |
| SplitWBPHS | Combine and parse raw WBPHS data files |
| sppntable | Current table of accepted species codes and focal species by... |
| StateSpace | Runs and reports on a generic state space model of population... |
| StrataSummary | Summarize design strata for analysis |
| StrataSummarySF | Summarize design strata for analysis using sf package |
| SummaryWBPHS | Summarize the flight information for an observer on the WBPHS |
| SwanCheck | Check if swan and swan nest entries are all correct |
| SwitchMatch | Check for the old style of transcribed data. |
| TidyDensities | Tidy standard ratio estimator for aerial survey data |
| TransData | Aggregate observations by Obs_Type, corrected transect,... |
| TransDataSF | Aggregate observations by Obs_Type, corrected transect,... |
| TransDataWBPHS | Summarize index counts for WBPHS data by Segment, Transect,... |
| TransSummary | Summarize the flight information for an observer |
| TransSummarySF | Summarize design transects for analysis using sf package |
| TrimToStrata | Trim observations that fall outside of the area of inference |
| UnitCheck | Check if Obs_Type entries are all correct |
| UnitCheckScribe | Check if Grouping entries are all correct |
| UpdateAllObjects | Update the 7 .rda objects for streamlined package function |
| ViewStrata | Display stratification in plot format |
| WBPHSbyYear | Calculate index estimates for a given year of WBPHS count and... |
| WBPHSHistoric | Current table of historic estimates for the WBPHS survey |
| WBPHSMultipleYear | Calculate index estimates for a given year of WBPHS count and... |
| WBPHS_PoolSpecies | Current table of guild associations for relevant species on... |
| WBPHSsppntable | Current table of accepted species codes and focal species for... |
| WBPHStidy | Calculate index estimates for specified WBPHS count and... |
| WBPHS_VCF | Current table of VCFs (visibility correction factors) for... |
| WriteResults | Output .csv files of historic estimates |
| YKDHistoric | Current table of historic estimates for the Yukon-Kuskokwim... |
| YKDVHistoric | Current table of historic estimates for the Yukon-Kuskokwim... |
| YKGHistoric | Current table of historic estimates for the Yukon-Kuskokwim... |
