CombinedReport: Runs a new combination of separate and combined estimates for...
In USFWS/AKaerial: Analysis of Alaska Region Aerial Survey Data

CombinedReport

R Documentation

Runs a new combination of separate and combined estimates for 2 observers

Description

CombinedReport will produce an annual estimate report in .html format for 2 observers

Usage

CombinedReport(
  strata.path = NA,
  transect.path = NA,
  data1.path = NA,
  data2.path = NA,
  area = NA,
  threshold = 0.5
)

Arguments

`strata.path`	The file location of the analysis stratification .shp file
`transect.path`	The file location of the transect design .shp file
`data1.path`	The file location of the .csv transcribed data for observer 1
`data2.path`	The file location of the .csv transcribed data for observer 2
`area`	The area code for dedicated MBM Alaska region surveys. Either folder.path or area must be specified. Acceptable values include: YKD - Yukon Kuskokwim Delta, for either geese or ducks ACP - Arctic Coastal Plain CRD - Copper River Delta WBPHS - The North American Waterfowl Breeding Population Habitat Survey BLSC - 2018 Black Scoter Survey
`threshold`	The distance in kilometers from a design file where observations are no longer counted. Defaults to 0.5 km.

Details

CombinedReport is designed to produce a basic .html report for quality checks for a particular year/crew combination. The report contains basic visual QA/QC maps of stratification and transect design, as well as observation information by observer. It also presents the basic and expanded table of estimates. It uses the markdown script within AKaerial (CombinedSurveyReport.Rmd) and writes an output report to the directory of data1.path.