Files in UUPharmacometrics/PsNR

R package for pharmacometric utilities

.Rbuildignore

.Rprofile

.gitignore

DESCRIPTION

NAMESPACE

PsNR.Rproj

R/PsNR-package.R R/bootstrap_cook.cov.calcul.R R/bootstrap_plot.cook.cov.R R/cdd_all.infl.indiv.table.R R/cdd_cov.cook.par.data.R R/cdd_create.data.R R/cdd_create.data.full.R R/cdd_cutoff.cov.cook.R R/cdd_delta.ofv.data.R R/cdd_dofv_vs_lin_dofv.R R/cdd_failed.values.R R/cdd_mark.options.data.R R/cdd_pdf.cdd.R R/cdd_pdf.cov.cook.R R/cdd_pdf.delta.ofv.R R/cdd_plot.cdd.R R/cdd_plot.cov.cook.R R/cdd_plot.cov.cook.par.R R/cdd_plot.delta.ofv.R R/cdd_plot.ofv.R R/cdd_warnings.data.R R/common_R_info.R R/common_additional_info.R R/common_break_text.R R/common_check_package_versions.R R/common_command_start.finish.time.R R/common_conditions.R R/common_ext.R R/common_ext_file_manipulations.R R/common_file_existence_in_directory.R R/common_find_r_files_in_subdir.R R/common_fix.column.names.R R/common_get_initial_estimates_from_ext.R R/common_iofv.R R/common_kable_table.R R/common_keep_symbols.R R/common_meta.R R/common_phi.R R/common_plot.table.R R/common_rawres.R R/common_reading.R R/common_result.R R/execute_data.obj.obsi.R R/execute_plot.obj.obsi.R R/npfit_data.npfit.R R/npfit_plot.npfit.R R/pvar_delta_plot.R R/pvar_get_legend_fun.R R/pvar_param_plot.R R/pvar_pvar_pdf.R R/qa_added_structural_param.R R/qa_all_structural_extra_plots.R R/qa_calc_and_add_shift_from_cwres.R R/qa_captions_structural.R R/qa_count_thetas.R R/qa_error_table.R R/qa_find_dvid_values.R R/qa_get_add_etas_table.R R/qa_get_all_covariates.R R/qa_get_boxcox_lambda_table.R R/qa_get_covariates_table.R R/qa_get_eta.etat_values.R R/qa_get_eta_transf_table.R R/qa_get_ext_ofv.R R/qa_get_full_omega_block.R R/qa_get_ii_table.R R/qa_get_iov_table.R R/qa_get_omega_values.R R/qa_get_outliers_table.R R/qa_get_overview_table.R R/qa_get_param_extra_table.R R/qa_get_param_var_tables.R R/qa_get_rawres_ofv.R R/qa_get_resmod_ruv_table.R R/qa_get_resmod_structural_details.R R/qa_get_resmod_structural_dofv.R R/qa_get_resmod_table.R R/qa_get_scm_table.R R/qa_get_structural_overview_table.R R/qa_get_table_for_vpc.R R/qa_hist_of_cdd_dofv.R R/qa_html_report.R R/qa_individual_plots.R R/qa_ofv_summary_table.R R/qa_plot.R R/qa_plot_ipred.R R/qa_plot_structural_vpc.R R/qa_plot_transformed_density.R R/qa_read_results.R R/qa_references.R R/qa_render.R R/qa_report_content.R R/qa_resmod_structural_details_tables.R R/qa_results_summary.R R/qa_sd_par_cov.R R/qa_settings.R R/qa_simeval_all_outliers_table.R R/qa_which_resmod_folders.R R/qa_xpose-qa.R R/resmod.R R/scm_first.inclusion.step.R R/scm_included.covariates.R R/scm_plot_first.included.step.R R/scm_plot_included.covariates.R R/simeval_all.outlier.report.table.R R/simeval_boxplot_i_ofv_res.R R/simeval_ebe.npde.all.R R/simeval_ebe.npde.all.eta.names.R R/simeval_ebe.npde.data.for.plots.R R/simeval_ebe.npde.empirical.distance.R R/simeval_ebe.npde.input.data.R R/simeval_ebe.npde.outlier.table.R R/simeval_ebe.npde.plot_1.R R/simeval_ebe.npde.plot_2.R R/simeval_ebe.npde.summary.table.R R/simeval_ofv.function_KLD.R R/simeval_ofv.i_ofv_npde.R R/simeval_ofv.i_ofv_ppc.R R/simeval_ofv.i_ofv_res.R R/simeval_ofv.kld_i_ofv.R R/simeval_ofv.p_ofv_ppc.R R/simeval_ofv.summary.table.R R/simeval_pdf.simeval.R R/simeval_plot.all.outlier.table.R R/simeval_residuals.histograms.R R/simeval_residuals.outlier.table.R R/simeval_residuals.summary.table.R R/utils-pipe.R R/vpc_mixtures.R README.md

inst/reporting/bibliography.bib

inst/reporting/header.html

inst/reporting/navbar.html

inst/reporting/style.css

man/PsNR-package.Rd man/R_info.Rd man/added_structural_param.Rd man/additional_info.Rd man/all_structural_extra_plots.Rd man/break_text.Rd man/captions_structural.Rd man/check_package_versions.Rd man/command_start.finish.time.Rd man/count_thetas.Rd man/do_safely.Rd man/dot-get_ext_ofv.Rd man/dot-get_rawres_ofv.Rd man/error_table.Rd man/ext_file.Rd man/find_dvid_values.Rd man/get_add_etas_table.Rd man/get_all_covariates.Rd man/get_boxcox_lambda_table.Rd man/get_covariates_table.Rd man/get_eta.etat_values.Rd man/get_eta_transf_table.Rd man/get_ext_ofv.Rd man/get_final_ofvs.Rd man/get_full_omega_block.Rd man/get_ii_table.Rd man/get_initial_estimate_values.Rd man/get_initial_estimates_from_ext.Rd man/get_iofv_sum.Rd man/get_iov_table.Rd man/get_ofv_summary.Rd man/get_omega_values.Rd man/get_outliers_table.Rd man/get_overview_table.Rd man/get_param_extra_table.Rd man/get_param_var_tables.Rd man/get_rawres_ofv.Rd man/get_resmod_structural_dofv.Rd man/get_resmod_table.Rd man/get_scm_table.Rd man/get_structural_overview_table.Rd man/hist_of_cdd_dofv.Rd man/iofv_vs_iofv.Rd man/kable_table.Rd man/metadata.Rd man/model_prefix.Rd man/ofv_summary_table.Rd man/pipe.Rd man/plot_result.Rd man/plot_transformed_density.Rd man/prepare_parvar_vpc.Rd man/prepare_va_cov_plot.Rd man/qa_html_report.Rd man/qa_report_content.Rd man/read_nm_ext.Rd man/read_nm_std_sim_table.Rd man/read_nm_std_table.Rd man/render_qa_table.Rd man/retrieve_qa_results.Rd man/retrieve_scm_results.Rd man/which_resmod_folders.Rd man/yaml_summary.Rd

renv.lock

renv/.gitignore

renv/activate.R

renv/settings.dcf

tests/testthat.R

tests/testthat/data/ebe_npde.csv

tests/testthat/data/ebe_npde_1.csv

tests/testthat/data/ebe_npde_NA.csv

tests/testthat/data/ebe_npde_NA_NA.csv

tests/testthat/data/ebe_npde_iiv_iov.csv

tests/testthat/data/extra_table

tests/testthat/data/raw_all_iofv.csv

tests/testthat/data/raw_all_iofv_1.csv

tests/testthat/data/raw_all_iofv_2.csv

tests/testthat/data/raw_all_iofv_3.csv

tests/testthat/data/raw_all_iofv_4.csv

tests/testthat/data/raw_results_run1.csv

tests/testthat/data/raw_results_scm.csv

tests/testthat/data/raw_results_simeval.csv

tests/testthat/data/residual_outliers.csv

tests/testthat/data/residual_outliers_1.csv

tests/testthat/data/residual_outliers_2.csv

tests/testthat/data/residual_outliers_3.csv

tests/testthat/data/residual_outliers_4.csv

tests/testthat/data/resmod_results.csv

tests/testthat/data/run7_linbase.dta

tests/testthat/data/sim-5.ext

tests/testthat/data/sim-5.phi

tests/testthat/data/sim_res_table-1.dta

tests/testthat/data/some_missing_ebe_npde.csv

tests/testthat/data/some_missing_ebe_npde_1.csv

tests/testthat/data/some_missing_ebe_npde_2.csv

tests/testthat/data/summary_cwres.csv

tests/testthat/data/summary_cwres_1.csv

tests/testthat/data/summary_iofv.csv

tests/testthat/data/summary_iofv_1.csv

tests/testthat/data/summary_iwres.csv

tests/testthat/test-cwres_iwres.R tests/testthat/test-ebe_npde.R tests/testthat/test-ext.R tests/testthat/test-ofv.R tests/testthat/test-outlier_report_table.R tests/testthat/test-phi.R tests/testthat/test-qa_results.R tests/testthat/test-rawres.R tests/testthat/test-reading.R tests/testthat/test-resmod.R tests/testthat/test-result.R

UUPharmacometrics/PsNR documentation built on June 30, 2023, 8:34 a.m.