Man pages for UUPharmacometrics/pmutils
R package for pharmacometric utilities
| added_structural_param | Get number of added parameters to the idv_varying_theta model... |
| additional_info | Get additional information from the yaml file about PsN... |
| all_structural_extra_plots | Print all structural part plots and tables. |
| break_text | Break command text in reasonable places so it can fit in a... |
| captions_structural | Captions for the structural part plots and tables based on... |
| check_package_versions | Check package versions. Will print an error message if some... |
| command_start.finish.time | Get command line text, start and finish time of the run |
| count_thetas | Count number of THETAs. |
| do_safely | Run expression and retain errors |
| dot-get_ext_ofv | Gets objective function value from the specific iteration. |
| dot-get_rawres_ofv | Get a ofv value from the csv file column ofv. |
| error_table | Creates a data frame with ERROR records |
| ext_file | Return name of .ext or .phi file |
| find_dvid_values | Finds DVID values based on the DVID column name. |
| get_add_etas_table | Consequences of including additional subject-level random... |
| get_all_covariates | Table of difference between model 2 and model 4 OFV values... |
| get_boxcox_lambda_table | A dataframe of the estimated shape parameters (Lambda) as... |
| get_covariates_table | Create covariate table for the summary part and the table of... |
| get_eta.etat_values | Calculate ETAT values for each eta in the phi file of the... |
| get_eta_transf_table | Calculate ETAT values for each eta in normal distribution.... |
| get_ext_ofv | Get ofv value from specific iteration row |
| get_final_ofvs | Get final OFVs |
| get_full_omega_block | Get table of estimated standard deviation (sd) and... |
| get_ii_table | Get influential individuals table. |
| get_initial_estimates_from_ext | Get initial estimates from the ext file. |
| get_initial_estimate_values | Get initial estimate values from specifick iteration row. |
| get_iofv_sum | Get sum of iOFV |
| get_iov_table | Consequences of including inter-occasion variability in terms... |
| get_ofv_summary | Retrieve OFV summary table |
| get_omega_values | Get omega values |
| get_outliers_table | Get outliers table. |
| get_overview_table | Get overview table. |
| get_param_extra_table | Get table of estimated shape parameters (Lambda)/degrees of... |
| get_param_var_tables | Summary of the transformed models dOFV values and added... |
| get_rawres_ofv | Get a ofv value from the csv file. |
| get_resmod_structural_dofv | Get dofv value from the resmod.csv file from the... |
| get_resmod_table | Open resmod_results.csv file and save output in the dataframe... |
| get_scm_table | Table of model parameter-covariate relationship, resulting... |
| get_structural_overview_table | Get structural data frame with expected improvement in OFV as... |
| hist_of_cdd_dofv | A histogram of distribution of OFV improvements (dOFV) when... |
| iofv_vs_iofv | Agreement in individual OFV contribution (iOFV) plot between... |
| kable_table | Create a kable table basen on chosen Rmarkdown format (latex... |
| metadata | Read the PsN metadata. To be used as an object |
| model_prefix | The prefix is what comes before the run number and the... |
| ofv_summary_table | Creates a data frame with OFV values from nonlinear model,... |
| pipe | Pipe operator |
| plot_result | Plot result |
| plot_transformed_density | Density of the Box-Cox/t-distribution transformed random... |
| prepare_parvar_vpc | Prepare VPC for parvar results |
| prepare_va_cov_plot | Prepare VA plot of FREM results |
| PsNR-package | PsNR: R package for pharmacometric utilities |
| qa_html_report | Render HTML version of QA report |
| qa_report_content | Content sections for the QA report |
| read_nm_ext | Read NONMEM ext and phi files |
| read_nm_std_sim_table | Read NONMEM simulation table in standard format |
| read_nm_std_table | Read NONMEM table in standard format |
| render_qa_table | Render table |
| retrieve_qa_results | Read in QA results |
| retrieve_scm_results | Retrieve SCM results |
| R_info | Add information from R run to the meta.yaml file. Will add R... |
| which_resmod_folders | Get all idv names. Idv name will be collected from the... |
| yaml_summary | Creates a yaml file with all results of the qa run. |
