parse_contact_table: Read and parse the TOPMed website contact table

In UW-GAC/contactparser: Parse the TOPMed contact table

Description

Read the table from either a csv or html file and reformat it to a tall format, with one row per email.

Usage

parse_contact_table(x)

Arguments

x	The path to a csv or html file containing the contact table.

Value

A formatted version of the contact table with columns:

• instutition_type: String indicating if this record is for a parent study, project, or center

• study_short_name: Study short name

• project: Associated TOPMed project

• contact_type: pi, co_pi, contact, dataset_contact, or phenotype_liaison

• email: email address for this contact

If there are multiple contact types for the same study/project, they will appear in separate records. Similarly, if the same email has multiple contact_types for the same study/project or is associated with different studies or projects, that email will appear multiple times.

Examples

{

html_file <- system.file(package = "contactparser", "testdata", "example.html")
parse_contact_table(html_file)

csv_file <- system.file(package = "contactparser", "testdata", "example.csv")
parse_contact_table(html_file)

}

UW-GAC/contactparser documentation built on Feb. 5, 2020, 4:59 a.m.