Man pages for UW-GAC/genetable
Functions to Build a Gene Definitions Table in the GAC Database
| define_boundaries | Define the genomic region spanning all the feature types of... |
| dot-add_ranges | Get feature ranges and add agg_start, agg_end, and... |
| dot-parse_optional | Intermediate parsing - parse optional fields from "optional"... |
| dot-parse_sources | Parse source and transcript_types columns to merge rows for... |
| dot-pull_required | Preliminary parsing for the attribute column of raw gtf... |
| dot-read_gtf | Read GENCODE gtf file to tibble. Assign fields based on tab... |
| dot-tidy_lists | Tidy fields with 0 to many entries: tags, ccdsids, onts. |
| filter_gencode | Filter the gencode tibble by feature and tag. |
| import_gencode | Import and tidy a gencode .gtf file |
| save_to_file | Save the tibble defining feature ranges to a tab-delimited... |
| summarize_tag | Summarize the features in a gencode-derived tibble. |
