get_problem_chunk: Get problem chunks from WGSA output file

Description Usage Arguments Examples

View source: R/troubleshooting-utils.R

Description

Get problem chunks from WGSA output file

Usage

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get_problem_chunk(source_file, chunk_size, problem_index)

Arguments

source_file

Path to the WGSA output file to parse (indel or SNV annotation)

chunk_size

Number of lines to parse each iteration (default 10,000)

problem_index

the index of desired chunk to get. Likely one more than the last output from a call to wgsaparsr::parse_to_file()

Examples

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## Not run: 

problem_chunk <-
  get_problem_chunk(source_file = "./path/to/source.gz",
                    chunk_size = 1000,
                    problem_index = 7)

## End(Not run)

UW-GAC/wgsaparsr documentation built on Aug. 9, 2020, 5:50 a.m.