kheatmap: Heat map function

In UW-Upwelling-Project/imageryML: Functions for Machine Learning with Oceanographic Imagery

Description

Bespoke function for Quan Seminar talk.

Usage

kheatmap(
  n_K,
  X_norm,
  datalist,
  main.n = 5,
  sub.n = n_K,
  iter.max = 25,
  nstart = 100,
  plotit = TRUE,
  ramp = "var",
  ramp.type = 2,
  dend.type = "original"
)

Arguments

n_K	Number of K cluster to use
X_norm	The normed centers as a matrix, each row is a centroid image
datalist	The list with dat, dat.clean and pos.loc.
main.n	The number of main clusters. These will have different colors.
sub.n	The number of sub levels. This will have different shades.
iter.max	Passed to the kmeans function.
nstart	Passed to the kmeans function.
plotit	If TRUE, plot the heat map.
ramp	Type of smoothing to do on shading within a group. Passed to myheatmap().
ramp.type	Type of shading to do. Passed to myheatmap().
dend.type	Typ of dendrogram passed to dendIMG().

Details

Notes: Probably too customized and prelimanary to keep.

Value

A list with two types of objects: a heatmap and a dendogram.

UW-Upwelling-Project/imageryML documentation built on Dec. 18, 2021, 6:11 p.m.