allele.genotype.plot: Produces a single plot with population curves of allelic...

In UWMAlberto-Lab/StandArich2: Standardizes n to estimate allelic richness and plots

Produces a single plot with population curves of allelic richness vs sample size

Description

Uses the Allelic richness table returned by the $A slot from rgenotypes.arich to print population curves of allelic richness as a function of sample size permutations allele.genotype.plot(results, g=0,xmin=0,xmax=50,xmark=10,main="",lwd=1,lty=1,lcol="black",print.pop=FALSE,pop.text.size=0.5) \itemresults \itemgset the n value to plot a vertical line over the plot to intersect at n. This helps visualize the standardized allelic richness values for a given n \itemxminsets the lower limit of the x axis \itemxmaxsets the higher limit of the x axis \itemxmarksets the interval of tick marks for the x axis. Following the code for seq(xmin,xmax,xmark) \itemmainString to feed the main argument of plot \itemlwdLine width for the lines in the plot. Can take a vector \itemltyLine type for the lines in the plot. Can take a vector \itemlcolLine color.Can take a vector \itemprint.popLogical to plot populations names in front of their lines. Defaults to FALSE \itempop.text.sizeControls the size of population names text. Produces a plot with lines showing allelic richness as a function of genet number for each population. A vertical line at the g intersection in the x axis is drawn Alberto F, Arnaud-Haond S, Duarte CM, Serrao EA (in press) Genetic diversity of a clonal angiosperm near its range limit: the case of Cymodocea nodosa in the Canary Islands. Marine Ecology Progress Series Filipe Alberto, Department of Biological Sciences, University of Wisconsin-Milwaukee

plot.allele.freq, allele.genotype.plot data(Exdata) Exresults<-rgenotypes.arich(Exdata,3) allele.genotype.plot(Exresults$R, g=10)

dplot

UWMAlberto-Lab/StandArich2 documentation built on March 28, 2023, 1:10 a.m.