API for VPetukhov/dropEstAnalysis
Analysis to produce figures from dropEst paper
| Global functions | |
|---|---|
| AnnotateClusters | Source code |
| AnnotateClustersByGraph | Source code |
| BordersOfClusterUnion | Source code |
| BuildCountMatrixFromReads | Source code |
| BuildPanel4 | Source code |
| CvResultsTable | Source code |
| EditDistanceDistribution | Source code |
| ExpressionMatrixToDataFrame | Source code |
| FillNa | Source code |
| FilterNUmis | Source code |
| FindClusterMarkers | Source code |
| GetCellsChull | Source code |
| GetExprDf | Source code |
| GetOverexpressedGenes | Source code |
| GetPagoda | Source code |
| GetPlotExrDf | Source code |
| GetTraialsSummary | Source code |
| GetTrainFolds | Source code |
| HeatmapAnnotGG | Source code |
| HeatmapLegendGuide | Source code |
| KFoldCV | Source code |
| MaxCharFreq | Source code |
| MaxFreqDistribution | Source code |
| MergeComparisonSummary | Source code |
| PairwiseHamming | Source code |
| PlotClustering | Source code |
| PlotCorrectionSize | Source code |
| PlotExpressionHeatmap | Source code |
| PlotFiltrationResults | Source code |
| PlotGeneFraction | Source code |
| PlotPagodaEmbeding | Source code |
| PlotTestedClassifierErrors | Source code |
| PlotTrialsSummary | Source code |
| PlotTrimmedCorrections | Source code |
| PredictFold | Source code |
| Read10xMatrix | Source code |
| SampleNoReps | Source code |
| SampleNumOfAdjacentUmis | Source code |
| SampleNumbersOfAdjacentUmis | Source code |
| ScoreCellsWithWrongLabels | Source code |
| ScoreDependsOnBorders | Source code |
| ScoringFunction | Source code |
| SplitClass | Source code |
| SplitToFolds | Source code |
| TableOfRescuedCells | Source code |
| TimeCollisions | Source code |
| TimeQuality | Source code |
| TimeUmiErrors | Source code |
| TrimAndCorrect | Source code |
| TrimUmisSummary | Source code |
| checkConvergence | Source code |
| computeEvidence | Source code |
| dSigmaGaussianKernel | Source code |
| epORGPC | Source code |
| gaussianKernel | Source code |
| generate_rmd | Source code |
| linearKernel | Source code |
| logit | Source code |
| optimizeEvidenceGaussianKernel | Source code |
| optimizeEvidenceGaussianKernelNoNoise | Source code |
| optimizeEvidenceLinearKernel | Source code |
| predictORMCGP | Source code |
| sigmoid | Source code |
| wflow_dir_build | Source code |
