Files in VPetukhov/dropEstAnalysis
Analysis to produce figures from dropEst paper

.Rbuildignore
.Rprofile
.gitignore
CITATION
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R R/cell_type_annotation.R R/kfold_cv.R R/label_noise_robustness.R R/pagoda_wrappers.R R/plot_functions.R R/robust_gp.R R/runtimes.R R/umi_correction.R R/utils.R R/wflow_patch.R README.md
analysis/.nojekyll
analysis/README.md
analysis/_site.yml
analysis/about.Rmd analysis/chunks.R
analysis/include/footer.html
analysis/include/header.html
analysis/index.Rmd analysis/license.Rmd code/README.md code/script.R
code/script.py
code/script.sh
data/README.md
data/annotation/bmmc1_clusters.csv
data/annotation/indrop_bmc_clusters.csv
data/annotation/pbmc8k_clusters.csv
docs/.nojekyll
docs/about.html
docs/annotation__annotation_bmc.html
docs/annotation__annotation_bmmc1.html
docs/annotation__annotation_pbmc8k.html
docs/annotation_bmmc1.html
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docs/cell_barcode_correction__merge_targets_mixture.html
docs/cell_barcode_correction__size_gain.html
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docs/index.html
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docs/runtimes__indrop_bmc.html
docs/runtimes__indrop_esc.html
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dropEstAnalysis.Rproj
notebooks/annotation/annotation_bmc.Rmd notebooks/annotation/annotation_bmmc1.Rmd notebooks/annotation/annotation_pbmc8k.Rmd notebooks/cell_barcode_correction/merge_targets_mixture.Rmd notebooks/cell_barcode_correction/size_gain.Rmd notebooks/human_mouse/HumanMouse10x.Rmd notebooks/human_mouse/HumanMouse10xPublicData.Rmd notebooks/human_mouse/HumanMouseDropSeq.Rmd notebooks/human_mouse/HumanMouseSCG29.Rmd
notebooks/human_mouse/figure/hm_10x_6k.Rmd/unnamed-chunk-3-1.png
notebooks/human_mouse/figure/hm_10x_6k.Rmd/unnamed-chunk-3-2.png
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notebooks/human_mouse/figure/hm_10x_6k.Rmd/unnamed-chunk-5-1.png
notebooks/human_mouse/hm_10x_1k.Rmd notebooks/human_mouse/hm_10x_6k.Rmd
notebooks/human_mouse/hm_10x_6k.html
notebooks/human_mouse/hm_drop_seq.Rmd notebooks/low_quality_cells/LowQualityCellsValidationPbmc33k.Rmd notebooks/low_quality_cells/label_noise_robustness.Rmd notebooks/low_quality_cells/validation_bmc.Rmd notebooks/low_quality_cells/validation_bmmc1.Rmd notebooks/low_quality_cells/validation_mouse_pc.Rmd notebooks/low_quality_cells/validation_pbmc8k.Rmd notebooks/runtimes/indrop_bmc.Rmd notebooks/runtimes/indrop_esc.Rmd notebooks/umi_correction/trim_aml_035_post.Rmd notebooks/umi_correction/trimmed_collisions.Rmd notebooks/umi_correction/umi_bmmc1.Rmd notebooks/umi_correction/umi_collisions.Rmd output/figures/README.md
src/RcppExports.cpp
src/utils.cpp
VPetukhov/dropEstAnalysis documentation built on Dec. 28, 2019, 8:16 p.m.