## ----setup, include = FALSE---------------------------------------------------
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
library(SMMT)
## ----code, eval=FALSE, include=TRUE-------------------------------------------
#
# start_date <- seq.Date(as.Date("1960-01-01"), to = as.Date("2022-01-01"), by = "1 year")
#
# res <- mutation_count(mutations = mutations_object$mutations,
# start_date, start_date + lubridate::years(1),
# territorial_changes_only = FALSE)
#
#
# p <- ggplot(data = res, aes(start_date, number_of_mutations_in_period)) + geom_bar(stat = "identity")
# print(p)
#
## ----code2, eval=FALSE, include=TRUE------------------------------------------
#
# res <- territorial_mutation_count(mutations = mutations_object$mutations,
# start_date, start_date + lubridate::years(1))
#
# p <- ggplot(data = res, aes(start_date, number_of_mutations_in_period)) + geom_bar(stat = "identity")
# print(p)
#
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