VanAndelInstitute/slinky: Putting the fun in LINCS L1000 data analysis
Wrappers to query the L1000 metadata available via the clue.io REST API as well as helpers for dealing with LINCS gctx files, extracting data sets of interest, converting to SummarizedExperiment objects, and some facilities for performing streamlined differential expression analysis of these data sets.
Getting started
Browse package contents
Package details |
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| Bioconductor views | DataImport DifferentialExpression GeneExpression GeneSetEnrichment PatternLogic ThirdPartyClient |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.11.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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