VanAndelInstitute/slinky: Putting the fun in LINCS L1000 data analysis

Wrappers to query the L1000 metadata available via the clue.io REST API as well as helpers for dealing with LINCS gctx files, extracting data sets of interest, converting to SummarizedExperiment objects, and some facilities for performing streamlined differential expression analysis of these data sets.

Getting started

Package details

AuthorEric J. Kort
Bioconductor views DataImport DifferentialExpression GeneExpression GeneSetEnrichment PatternLogic ThirdPartyClient
MaintainerEric J. Kort <[email protected]>
LicenseMIT + file LICENSE
Version0.99.20
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("VanAndelInstitute/slinky")
VanAndelInstitute/slinky documentation built on Oct. 26, 2018, 4:04 p.m.