Man pages for Viant-Metabolomics/msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

assessPuritySingleAssess the purity of a single LC-MS/MS or DI-MS/MS file
averageSpectra-purityD-methodUsing purityD object, calculates to average mz, intensity and...
averageSpectraSingleCalculates to average mz, intensity and signal-to-noise of...
dimsPredictPurity-purityD-methodUsing purityD object, assess anticipated purity from a DI-MS...
dimsPredictPuritySinglePredict the precursor purity from a DI-MS dataset
filterp-purityD-methodFilter out peaks based on intensity and RSD criteria
frag4feature-purityA-methodAssign precursor purity scored fragmentation spectra to XCMS...
get_additional_mzml_metaGet additional mzML meta
GetfilesGet files for DI-MS processing
getP-purityD-methodGet peaklist for a purityD object
groupPeaksExGroup peaklists from a list of dataframes
groupPeaks-purityD-methodUsing purityD object, group multiple peaklists by similar mz...
initialize-purityD-methodConstructor for S4 class to represent a DI-MS purityD
iwNormGaussGaussian normalisation for isolation window efficiency
iwNormQE.5Q-Exactive +/- 0.5 range, normalisation for isolation window...
iwNormRcosineRaised cosine normalisation for isolation window efficiency
pcalcPerform purity calculation on a peak matrix
purityAAssess the purity of multiple LC-MS/MS or DI-MS/MS files...
purityD-classAn S4 class to represent a DI-MS purityD
purityXAssessing anticipated purity of XCMS features from an LC-MS...
show-purityA-methodShow method for purityA class
show-purityD-methodShow method for purityD
show-purityX-methodShow method for purityX
spectral_matchingSpectral matching
subtractMZSubtract MZ values based on ppm tolerance and noise ratio
subtract-purityD-methodUsing Subtract MZ values based on ppm tolerance and noise...
validate-purityA-methodValidate precursor purity predictions using LC-MS and...
writeOut-purityD-methodUsing purityD object, save peaks as text files
Viant-Metabolomics/msPurity documentation built on Nov. 8, 2017, 1:10 a.m.