View source: R/utils_censored.R
MSstatsHandleMissing | R Documentation |
Handle censored missing values
MSstatsHandleMissing(
input,
summary_method,
impute,
missing_symbol,
censored_cutoff
)
input |
'data.table' in MSstats data format |
summary_method |
summarization method ('summaryMethod' parameter to 'dataProcess') |
impute |
if TRUE, missing values are supposed to be imputed ('MBimpute' parameter to 'dataProcess') |
missing_symbol |
'censoredInt' parameter to 'dataProcess' |
censored_cutoff |
'maxQuantileforCensored' parameter to 'dataProcess' |
data.table
raw = DDARawData
method = "TMP"
cens = "NA"
impute = TRUE
MSstatsConvert::MSstatsLogsSettings(FALSE)
input = MSstatsPrepareForDataProcess(raw, 2, NULL)
input = MSstatsNormalize(input, "EQUALIZEMEDIANS")
input = MSstatsMergeFractions(input)
input = MSstatsHandleMissing(input, "TMP", TRUE, "NA", 0.999)
head(input)
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