API for Vitek-Lab/MSstatsLiP
LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments
| Global functions | |
|---|---|
| .checkBarcodeParams | Source code |
| .checkSpectronautConverterParams | Source code |
| .covered_set | Source code |
| .groupComparisonCheck | Source code |
| .length_one | Source code |
| .locateCheck | Source code |
| .location | Source code |
| .location_start | Source code |
| .num_match | Source code |
| .rmConfounded | Source code |
| .summarizeCheck | Source code |
| DIANNtoMSstatsLiPFormat | Man page Source code |
| LiPRawData | Man page |
| MSstatsLiP | Man page |
| MSstatsLiP_Summarized | Man page |
| MSstatsLiP_data | Man page |
| MSstatsLiP_model | Man page |
| PCAPlotLiP | Man page Source code |
| ResistanceBarcodePlotLiP | Man page Source code |
| SkylineTest | Man page |
| SkylinetoMSstatsLiPFormat | Man page Source code |
| SpectronauttoMSstatsLiPFormat | Man page Source code |
| StructuralBarcodePlotLiP | Man page Source code |
| TrPRawData | Man page |
| annotSite | Man page Source code |
| calculate.pc | Source code |
| calculateProteolyticResistance | Man page Source code |
| calculateTrypticity | Man page Source code |
| correlationPlotLiP | Man page Source code |
| dataProcessPlotsLiP | Man page Source code |
| dataSummarizationLiP | Man page Source code |
| extract_protein_name | Source code |
| groupComparisonLiP | Man page Source code |
| groupComparisonPlotsLiP | Man page Source code |
| locateMod | Man page Source code |
| locatePTM | Man page Source code |
| pca.component.bar.plot | Source code |
| pca.component.comparison.plot | Source code |
| pca.component.prot.plot | Source code |
| raw_lip | Man page |
| raw_prot | Man page |
| tidyFasta | Man page Source code |
| trypticHistogramLiP | Man page Source code |
